ORF	Name	Complex	PubMed_id	Method	GO_id	GO_term	Jaccard_Index
YKR068C	BET3	TRAPP complex	10727015	"Affinity Capture-Western,Affinity Capture-MS"	GO:0030008	TRAPP complex	1
YML077W	BET5	TRAPP complex
YDR108W	GSG1	TRAPP complex
YGR166W	KRE11	TRAPP complex
YDR407C	TRS120	TRAPP complex
YMR218C	TRS130	TRAPP complex
YBR254C	TRS20	TRAPP complex
YDR246W	TRS23	TRAPP complex
YDR472W	TRS31	TRAPP complex
YOR115C	TRS33	TRAPP complex
YNL021W	HDA1	histone deacetylase complex	11287668	"Affinity Capture-Western,Reconstituted Complex"	GO:0000118	histone deacetylase complex	0.166666666666667
YDR295C	HDA2	histone deacetylase complex
YPR179C	HDA3	histone deacetylase complex
YDR448W	ADA2	Ada2p/Gcn5p/Ada3 transcription activator complex	10490601	"Reconstituted Complex,Co-purification"	GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex	1
YOR023C	AHC1	Ada2p/Gcn5p/Ada3 transcription activator complex
YGR252W	GCN5	Ada2p/Gcn5p/Ada3 transcription activator complex
YPL254W	HFI1	Ada2p/Gcn5p/Ada3 transcription activator complex
YDR176W	NGG1	Ada2p/Gcn5p/Ada3 transcription activator complex
YJL065C	DLS1	chromatin accessibility complex	14673157	Affinity Capture-Western	GO:0008623	chromatin accessibility complex	1
YDR121W	DPB4	chromatin accessibility complex
YOR304W	ISW2	chromatin accessibility complex
YGL133W	ITC1	chromatin accessibility complex
YGL051W	MST27	Mst27p/Mst28p complex	12925749	Co-purification	-	-	0
YAR033W	MST28	Mst27p/Mst28p complex
YPL048W	CAM1	eEF1	3528160	Co-purification	GO:0005853	eukaryotic translation elongation factor 1 complex	0.8
YAL003W	EFB1	eEF1
YPR080W	TEF1	eEF1
YBR118W	TEF2	eEF1
YKL081W	TEF4	eEF1
YJR060W	CBF1	Cbf1p/Met4p/Met28p complex	9171357	Reconstituted Complex	GO:0000776	kinetochore	0.0454545454545455
YIR017C	MET28	Cbf1p/Met4p/Met28p complex
YNL103W	MET4	Cbf1p/Met4p/Met28p complex
YDL043C	PRP11	Prp9p/Prp11p/Prp21p complex(SF3a complex)	8211114	Affinity Capture-MS	GO:0005686	snRNP U2	0.25
YJL203W	PRP21	Prp9p/Prp11p/Prp21p complex(SF3a complex)
YDL030W	PRP9	Prp9p/Prp11p/Prp21p complex(SF3a complex)
YIR017C	MET28	Met4p/Met28p/Met31p complex	9799240	"Two-hybrid,Reconstituted Complex"	-	-	0
YPL038W	MET31	Met4p/Met28p/Met31p complex
YNL103W	MET4	Met4p/Met28p/Met31p complex
YJL085W	EXO70	Exocyst complex	8978675	Affinity Capture-MS	GO:0000145	exocyst	1
YBR102C	EXO84	Exocyst complex
YLR166C	SEC10	Exocyst complex
YGL233W	SEC15	Exocyst complex
YER008C	SEC3	Exocyst complex
YDR166C	SEC5	Exocyst complex
YIL068C	SEC6	Exocyst complex
YPR055W	SEC8	Exocyst complex
YER019C-A	SBH2	Ssh1p translocon complex	8612571	Affinity Capture-Western	GO:0005784	translocon complex	0.6
YBR283C	SSH1	Ssh1p translocon complex
YDR086C	SSS1	Ssh1p translocon complex
YHR158C	KEL1	Kel1p/Kel2p complex	9786949	"Two-hybrid,Affinity Capture-Western"	-	-	0
YGR238C	KEL2	Kel1p/Kel2p complex
YDL175C	AIR2	TRAMP complex (Air2p)	15828860	"Affinity Capture-Western,Affinity Capture-MS"	GO:0031499	TRAMP complex	0.75
YJL050W	MTR4	TRAMP complex (Air2p)
YOL115W	PAP2	TRAMP complex (Air2p)
YIL033C	BCY1	cAMP-dependent protein kinase	3036373	Biochemical Activity	GO:0005952	cAMP-dependent protein kinase complex	0.75
YJL164C	TPK1	cAMP-dependent protein kinase
YPL203W	TPK2	cAMP-dependent protein kinase
YKL166C	TPK3	cAMP-dependent protein kinase
YMR023C	MSS1	Mto1p/Mss1p complex	9774408	Co-purification	-	-	0
YGL236C	MTO1	Mto1p/Mss1p complex
YGR188C	BUB1	Bub1p/Bub3p complex	10837255	Affinity Capture-Western	GO:0033597	mitotic checkpoint complex	0.2
YOR026W	BUB3	Bub1p/Bub3p complex
YNL076W	MKS1	Mks1p/Rtg2p complex	14536080	Affinity Capture-Western	GO:0046695	SLIK (SAGA-like) complex	0.0555555555555556
YGL252C	RTG2	Mks1p/Rtg2p complex
YBR131W	CCZ1	Mon1p/Ccz1p complex	12364329	Affinity Capture-Western	-	-	0
YGL124C	MON1	Mon1p/Ccz1p complex
YIL062C	ARC15	Arp2/3 protein complex	10377407	"Affinity Capture-Western,Co-purification"	GO:0005885	Arp2/3 protein complex	1
YLR370C	ARC18	Arp2/3 protein complex
YKL013C	ARC19	Arp2/3 protein complex
YNR035C	ARC35	Arp2/3 protein complex
YBR234C	ARC40	Arp2/3 protein complex
YDL029W	ARP2	Arp2/3 protein complex
YJR065C	ARP3	Arp2/3 protein complex
YDR013W	PSF1	GINS complex	12730134	"Two-hybrid,Affinity Capture-Western"	GO:0000811	GINS complex	1
YJL072C	PSF2	GINS complex
YOL146W	PSF3	GINS complex
YDR489W	SLD5	GINS complex
YOL090W	MSH2	MSH2p/MSH6p complex	8816473	Co-purification	GO:0032301	MutSalpha complex	1
YDR097C	MSH6	MSH2p/MSH6p complex
YNL072W	RNH201	ribonuclease H2 complex	14734815	Affinity Capture-MS	GO:0032299	ribonuclease H2 complex	1
YDR279W	RNH202	ribonuclease H2 complex
YLR154C	RNH203	ribonuclease H2 complex
YBR045C	GIP1	Gip1p/Glc7p complex	8754819	"Two-hybrid,Affinity Capture-Western"	GO:0000164	protein phosphatase type 1 complex	0.285714285714286
YER133W	GLC7	Gip1p/Glc7p complex
YBR036C	CSG2	Sur1p/Csg2p complex	12954640	Affinity Capture-Western	-	-	0
YPL057C	SUR1	Sur1p/Csg2p complex
YER012W	PRE1	20S proteasome	9087403	Co-crystal Structure	GO:0019774	proteasome core complex, beta-subunit complex	0.5
YOR362C	PRE10	20S proteasome
YPR103W	PRE2	20S proteasome
YJL001W	PRE3	20S proteasome
YFR050C	PRE4	20S proteasome
YMR314W	PRE5	20S proteasome
YOL038W	PRE6	20S proteasome
YBL041W	PRE7	20S proteasome
YML092C	PRE8	20S proteasome
YGR135W	PRE9	20S proteasome
YOR157C	PUP1	20S proteasome
YGR253C	PUP2	20S proteasome
YER094C	PUP3	20S proteasome
YGL011C	SCL1	20S proteasome
YLR270W	DCS1	Dcs1p/Dcs2 heterodimer	16963086	Affinity Capture-Western	GO:0000932	cytoplasmic mRNA processing body	0.133333333333333
YOR173W	DCS2	Dcs1p/Dcs2 heterodimer
YOR210W	RPB10	DNA-directed RNA polymerase II complex	2070414	Co-crystal Structure	GO:0005665	DNA-directed RNA polymerase II, core complex	1
YOL005C	RPB11	DNA-directed RNA polymerase II complex
YOR151C	RPB2	DNA-directed RNA polymerase II complex
YIL021W	RPB3	DNA-directed RNA polymerase II complex
YJL140W	RPB4	DNA-directed RNA polymerase II complex
YBR154C	RPB5	DNA-directed RNA polymerase II complex
YDR404C	RPB7	DNA-directed RNA polymerase II complex
YOR224C	RPB8	DNA-directed RNA polymerase II complex
YGL070C	RPB9	DNA-directed RNA polymerase II complex
YHR143W-A	RPC10	DNA-directed RNA polymerase II complex
YDL140C	RPO21	DNA-directed RNA polymerase II complex
YPR187W	RPO26	DNA-directed RNA polymerase II complex
YPL194W	DDC1	Rad17p/Ddc1p/Mec3p complex	12672803	Affinity Capture-Western	-	-	0
YLR288C	MEC3	Rad17p/Ddc1p/Mec3p complex
YOR368W	RAD17	Rad17p/Ddc1p/Mec3p complex
YBR123C	TFC1	transcription factor TFIIIC complex	6370678	Co-purification	GO:0000127	transcription factor TFIIIC complex	1
YAL001C	TFC3	transcription factor TFIIIC complex
YGR047C	TFC4	transcription factor TFIIIC complex
YDR362C	TFC6	transcription factor TFIIIC complex
YOR110W	TFC7	transcription factor TFIIIC complex
YPL007C	TFC8	transcription factor TFIIIC complex
YBL008W	HIR1	HIR complex	16303565	Affinity Capture-MS	GO:0000417	HIR complex	1
YOR038C	HIR2	HIR complex
YJR140C	HIR3	HIR complex
YBR215W	HPC2	HIR complex
YKL112W	ABF1	nucleotide-excision repair factor 4 complex	15226437	Affinity Capture-Western	GO:0000113	nucleotide-excision repair factor 4 complex	1
YPL046C	ELC1	nucleotide-excision repair factor 4 complex
YBR114W	RAD16	nucleotide-excision repair factor 4 complex
YJR052W	RAD7	nucleotide-excision repair factor 4 complex
YLR233C	EST1	Telomerase	10898986	Affinity Capture-Western	GO:0005697	telomerase holoenzyme complex	0.75
YLR318W	EST2	Telomerase
YIL009C-A	EST3	Telomerase
YOL124C	TRM11	adoMet-dependent tRNA methyltransferase (Mtase) Complex	15899842	Affinity Capture-Western	-	-	0
YNR046W	TRM112	adoMet-dependent tRNA methyltransferase (Mtase) Complex
YBR112C	CYC8	Sko1p/Cyc8p/Tup1 repressor complex	12086627	Affinity Capture-Western	GO:0017053	transcriptional repressor complex	0.666666666666667
YNL167C	SKO1	Sko1p/Cyc8p/Tup1 repressor complex
YCR084C	TUP1	Sko1p/Cyc8p/Tup1 repressor complex
YDL116W	NUP84	Nup84p complex	10747086	Affinity Capture-Western	GO:0005643	nuclear pore	0.122448979591837
YJR042W	NUP85	Nup84p complex
YKL057C	NUP120	Nup84p complex
YGL092W	NUP145	Nup84p complex
YLR208W	SEC13	Nup84p complex
YGL100W	SEH1	Nup84p complex
YML065W	ORC1	Origin recognition complex	1579162	Co-purification	GO:0005664	nuclear origin of replication recognition complex	1
YBR060C	ORC2	Origin recognition complex
YLL004W	ORC3	Origin recognition complex
YPR162C	ORC4	Origin recognition complex
YNL261W	ORC5	Origin recognition complex
YHR118C	ORC6	Origin recognition complex
YAL010C	MDM10	mitochondrial sorting and assembly machinery complex	17410204	Affinity Capture-Western	GO:0001401	mitochondrial sorting and assembly machinery complex	1
YHR083W	SAM35	mitochondrial sorting and assembly machinery complex
YMR060C	SAM37	mitochondrial sorting and assembly machinery complex
YNL026W	SAM50	mitochondrial sorting and assembly machinery complex
YMR167W	MLH1	Mlh1p/Mlh3p complex	10570173	"Two-hybrid,Affinity Capture-Western"	GO:0032390	MutLbeta complex	1
YPL164C	MLH3	Mlh1p/Mlh3p complex
YEL027W	CUP5	"H+-transporting ATPase, vacuolar"	11592965	"Co-localization, Biochemical Activity"	GO:0000221	vacuolar proton-transporting V-type ATPase, V1 domain	0.615384615384615
YHR026W	PPA1	"H+-transporting ATPase, vacuolar"
YDL185W	TFP1	"H+-transporting ATPase, vacuolar"
YPL234C	TFP3	"H+-transporting ATPase, vacuolar"
YHR039C-A	VMA10	"H+-transporting ATPase, vacuolar"
YPR036W	VMA13	"H+-transporting ATPase, vacuolar"
YBR127C	VMA2	"H+-transporting ATPase, vacuolar"
YOR332W	VMA4	"H+-transporting ATPase, vacuolar"
YKL080W	VMA5	"H+-transporting ATPase, vacuolar"
YLR447C	VMA6	"H+-transporting ATPase, vacuolar"
YGR020C	VMA7	"H+-transporting ATPase, vacuolar"
YEL051W	VMA8	"H+-transporting ATPase, vacuolar"
YOR270C	VPH1	"H+-transporting ATPase, vacuolar"
YBR160W	CDC28	Cdc28p/Clb5p complex	8319908	Traceable author statement	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.0666666666666667
YPR120C	CLB5	Cdc28p/Clb5p complex
YNL221C	POP1	nucleolar ribonuclease P complex	9620854	Affinity Capture-MS	GO:0005655	nucleolar ribonuclease P complex	0.9
YNL282W	POP3	nucleolar ribonuclease P complex
YBR257W	POP4	nucleolar ribonuclease P complex
YAL033W	POP5	nucleolar ribonuclease P complex
YGR030C	POP6	nucleolar ribonuclease P complex
YBR167C	POP7	nucleolar ribonuclease P complex
YBL018C	POP8	nucleolar ribonuclease P complex
YIR015W	RPR2	nucleolar ribonuclease P complex
YHR062C	RPP1	nucleolar ribonuclease P complex
YLR163C	MAS1	mitochondrial processing peptidase complex	2905264	Co-purification	GO:0017087	mitochondrial processing peptidase complex	1
YHR024C	MAS2	mitochondrial processing peptidase complex
YKR020W	VPS51	GARP complex	12377769	Affinity Capture-MS	GO:0000938	GARP complex	1
YDR484W	VPS52	GARP complex
YJL029C	VPS53	GARP complex
YDR027C	VPS54	GARP complex
YGR092W	DBF2	Mob1p/Dbf2p complex	9528782	"Two-hybrid,Affinity Capture-Western,Reconstituted Complex"	-	-	0
YIL106W	MOB1	Mob1p/Dbf2p complex
YER173W	RAD24	DNA replication factor C complex (Rad24p)	12604797	Reconstituted Complex	GO:0005663	DNA replication factor C complex	0.833333333333333
YJR068W	RFC2	DNA replication factor C complex (Rad24p)
YNL290W	RFC3	DNA replication factor C complex (Rad24p)
YOL094C	RFC4	DNA replication factor C complex (Rad24p)
YBR087W	RFC5	DNA replication factor C complex (Rad24p)
YNL230C	ELA1	Ela1p/Elc1p complex	10430890	Reconstituted Complex	GO:0031463	Cul3-RING ubiquitin ligase complex	0.4
YPL046C	ELC1	Ela1p/Elc1p complex
YPL002C	SNF8	ESCRT II complex	12194858	Co-purification	GO:0000814	ESCRT II complex	1
YJR102C	VPS25	ESCRT II complex
YLR417W	VPS36	ESCRT II complex
YGL237C	HAP2	CCAAT-binding factor complex	9372932	Reconstituted Complex	GO:0016602	CCAAT-binding factor complex	1
YBL021C	HAP3	CCAAT-binding factor complex
YKL109W	HAP4	CCAAT-binding factor complex
YOR358W	HAP5	CCAAT-binding factor complex
YKR028W	SAP190	Sap190p/Sit4p complex	8649382	Affinity Capture-Western	-	-	0
YDL047W	SIT4	Sap190p/Sit4p complex
YER159C	BUR6	NC2 complex	8948634	Co-purification	-	-	0
YDR397C	NCB2	NC2 complex
YJL115W	ASF1	Rad53p/Asf1p complex	11172707	Affinity Capture-Western	GO:0005678	chromatin assembly complex	0.25
YPL153C	RAD53	Rad53p/Asf1p complex
YLR060W	FRS1	Phenylalaninine-tRNA-ligase	5473188	Co-purification	GO:0009328	phenylalanine-tRNA ligase complex	1
YFL022C	FRS2	Phenylalaninine-tRNA-ligase
YLR246W	ERF2	palmitoyltransferase complex	12193598	Affinity Capture-Western	GO:0031211	palmitoyltransferase complex	1
YOL110W	SHR5	palmitoyltransferase complex
YGL174W	BUD13	RES complex	15565172	Affinity Capture-MS	GO:0005686	snRNP U2	0.0714285714285714
YLR016C	PML1	RES complex
YIR005W	IST3	RES complex
YNL221C	POP1	ribonuclease MRP complex	9620854	Affinity Capture-MS	GO:0000172	ribonuclease MRP complex	0.909090909090909
YNL282W	POP3	ribonuclease MRP complex
YBR257W	POP4	ribonuclease MRP complex
YAL033W	POP5	ribonuclease MRP complex
YGR030C	POP6	ribonuclease MRP complex
YBR167C	POP7	ribonuclease MRP complex
YBL018C	POP8	ribonuclease MRP complex
YLR145W	RMP1	ribonuclease MRP complex
YHR062C	RPP1	ribonuclease MRP complex
YDR478W	SNM1	ribonuclease MRP complex
YPL121C	MEI5	Mei5p/Sae3p complex	15620352	Affinity Capture-Western	-	-	0
YHR079C-A	SAE3	Mei5p/Sae3p complex
YDL181W	INH1	mitochondrial ATPase inhibitor complex	6200468	Co-purification	GO:0005753	mitochondrial proton-transporting ATP synthase complex	1
YDL130W-A	STF1	mitochondrial ATPase inhibitor complex
YGR008C	STF2	mitochondrial ATPase inhibitor complex
YMR059W	SEN15	tRNA-intron endonuclease complex	9200603	"Two-hybrid,Affinity Capture-Western"	GO:0000214	tRNA-intron endonuclease complex	1
YLR105C	SEN2	tRNA-intron endonuclease complex
YAR008W	SEN34	tRNA-intron endonuclease complex
YPL083C	SEN54	tRNA-intron endonuclease complex
YDR137W	RGP1	guanyl-nucleotide exchange factor complex	10990452	Affinity Capture-Western	GO:0034066	Ric1p-Rgp1p complex	1
YLR039C	RIC1	guanyl-nucleotide exchange factor complex
YOR310C	NOP58	box C/D snoRNP complex	12215523	Affinity Capture-Western	GO:0032040	small-subunit processome	0.0833333333333333
YDL014W	NOP1	box C/D snoRNP complex
YEL026W	SNU13	box C/D snoRNP complex
YLR197W	SIK1	box C/D snoRNP complex
YPL178W	CBC2	commitment complex	2529976	Co-purification	GO:0005685	snRNP U1	0.772727272727273
YLR116W	MSL5	commitment complex
YKL074C	MUD2	commitment complex
YMR125W	STO1	commitment complex
YER029C	SMB1	commitment complex
YGR074W	SMD1	commitment complex
YLR275W	SMD2	commitment complex
YLR147C	SMD3	commitment complex
YOR159C	SME1	commitment complex
YFL017W-A	SMX2	commitment complex
YPR182W	SMX3	commitment complex
YDL087C	LUC7	commitment complex
YBR119W	MUD1	commitment complex
YHR086W	NAM8	commitment complex
YML046W	PRP39	commitment complex
YKL012W	PRP40	commitment complex
YDR235W	PRP42	commitment complex
YIL061C	SNP1	commitment complex
YDR240C	SNU56	commitment complex
YGR013W	SNU71	commitment complex
YLR298C	YHC1	commitment complex
YPR144C	NOC4	Noc4p/Nop14p complex	12446671	Affinity Capture-Western	GO:0030692	Noc4p-Nop14p complex	1
YDL148C	NOP14	Noc4p/Nop14p complex
YPL049C	DIG1	Dig1p/Ste12p/Dig2p complex	10825185	Reconstituted Complex	-	-	0
YDR480W	DIG2	Dig1p/Ste12p/Dig2p complex
YHR084W	STE12	Dig1p/Ste12p/Dig2p complex
YBR228W	SLX1	Slx1p/Slx4p complex	12832395	Co-purification	GO:0033557	Slx1-Slx4 complex	1
YLR135W	SLX4	Slx1p/Slx4p complex
YBL026W	LSM2	U6 snRNP complex	11720284	Affinity Capture-MS	GO:0005688	snRNP U6	0.888888888888889
YLR438C-A	LSM3	U6 snRNP complex
YER112W	LSM4	U6 snRNP complex
YER146W	LSM5	U6 snRNP complex
YDR378C	LSM6	U6 snRNP complex
YNL147W	LSM7	U6 snRNP complex
YJR022W	LSM8	U6 snRNP complex
YMR268C	PRP24	U6 snRNP complex
YDR075W	PPH3	histone H2A phosphatase complex	16299494	Affinity Capture-MS	-	-	0
YNL201C	PSY2	histone H2A phosphatase complex
YBL046W	PSY4	histone H2A phosphatase complex
YAL010C	MDM10	Mdm12p/Mmm1p/Mdm10p complex	13679517	Affinity Capture-Western	GO:0032865	Mdm10/Mdm12/Mmm1 complex	1
YOL009C	MDM12	Mdm12p/Mmm1p/Mdm10p complex
YLL006W	MMM1	Mdm12p/Mmm1p/Mdm10p complex
YML085C	TUB1	Tubulins	15321725	Two-hybrid	GO:0045298	tubulin complex	0.666666666666667
YFL037W	TUB2	Tubulins
YMR055C	BUB2	Bub2p/Bfa1p complex	11493673	Affinity Capture-Western	-	-	0
YJR053W	BFA1	Bub2p/Bfa1p complex
YNL102W	POL1	alpha DNA polymerase:primase complex	3888995	Co-purification	GO:0005658	alpha DNA polymerase:primase complex	1
YBL035C	POL12	alpha DNA polymerase:primase complex
YIR008C	PRI1	alpha DNA polymerase:primase complex
YKL045W	PRI2	alpha DNA polymerase:primase complex
YDR301W	CFT1	mRNA cleavage and polyadenylation specificity factor complex	12819204	Affinity Capture-MS	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	1
YLR115W	CFT2	mRNA cleavage and polyadenylation specificity factor complex
YJR093C	FIP1	mRNA cleavage and polyadenylation specificity factor complex
YER133W	GLC7	mRNA cleavage and polyadenylation specificity factor complex
YKL059C	MPE1	mRNA cleavage and polyadenylation specificity factor complex
YKR002W	PAP1	mRNA cleavage and polyadenylation specificity factor complex
YNL317W	PFS2	mRNA cleavage and polyadenylation specificity factor complex
YAL043C	PTA1	mRNA cleavage and polyadenylation specificity factor complex
YGR156W	PTI1	mRNA cleavage and polyadenylation specificity factor complex
YDR195W	REF2	mRNA cleavage and polyadenylation specificity factor complex
YNL222W	SSU72	mRNA cleavage and polyadenylation specificity factor complex
YKL018W	SWD2	mRNA cleavage and polyadenylation specificity factor complex
YOR179C	SYC1	mRNA cleavage and polyadenylation specificity factor complex
YLR277C	YSH1	mRNA cleavage and polyadenylation specificity factor complex
YPR107C	YTH1	mRNA cleavage and polyadenylation specificity factor complex
YJR094C	IME1	Ume6p/Ime1p complex	8628320	Two-hybrid	GO:0000508	Rpd3L complex	0.0769230769230769
YDR207C	UME6	Ume6p/Ime1p complex
YDL042C	SIR2	chromatin silencing complex	15899856	Affinity Capture-Western	GO:0005677	chromatin silencing complex	0.6
YLR442C	SIR3	chromatin silencing complex
YDR227W	SIR4	chromatin silencing complex
YHR005C-A	MRS11	mitochondrial intermembrane space protein transporter complex	9822593	"Affinity Capture-Western,Co-purification"	GO:0042719	mitochondrial intermembrane space protein transporter complex	0.5
YEL020W-A	TIM9	mitochondrial intermembrane space protein transporter complex
YOR026W	BUB3	mitotic checkpoint complex	11726501	Affinity Capture-Western	GO:0033597	mitotic checkpoint complex	1
YGL116W	CDC20	mitotic checkpoint complex
YJL030W	MAD2	mitotic checkpoint complex
YJL013C	MAD3	mitotic checkpoint complex
YPL147W	PXA1	Pxa1p/Pxa2p complex	8876235	Affinity Capture-Western	-	-	0
YKL188C	PXA2	Pxa1p/Pxa2p complex
YDR422C	SIP1	Snf1p/Snf4p/Sip1p complex	12393914	Affinity Capture-Western	GO:0031588	AMP-activated protein kinase complex	0.6
YDR477W	SNF1	Snf1p/Snf4p/Sip1p complex
YGL115W	SNF4	Snf1p/Snf4p/Sip1p complex
YOR005C	DNL4	DNA ligase IV	17567543	Two-hybrid	GO:0032807	DNA ligase IV complex	0.666666666666667
YGL090W	LIF1	DNA ligase IV
YOR321W	PMT3	Protein O-mannosyltransferase(Pmt3p/Pmt5p)	12551906	Affinity Capture-Western	-	-	0
YDL093W	PMT5	Protein O-mannosyltransferase(Pmt3p/Pmt5p)
YGR009C	SEC9	SNARE complex	10048921	Co-crystal Structure	GO:0031201	SNARE complex	1
YPL232W	SSO1	SNARE complex
YAL030W	SNC1	SNARE complex
YBR126C	TPS1	"alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)"	9194697	Two-hybrid	GO:0005946	alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)	1
YDR074W	TPS2	"alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)"
YMR261C	TPS3	"alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)"
YML100W	TSL1	"alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)"
YFL039C	ACT1	Ino80p complex	10952318	"Affinity Capture-Western,Affinity Capture-MS"	GO:0031011	INO80 complex	1
YJL081C	ARP4	Ino80p complex
YNL059C	ARP5	Ino80p complex
YOR141C	ARP8	Ino80p complex
YFL013C	IES1	Ino80p complex
YLR052W	IES3	Ino80p complex
YOR189W	IES4	Ino80p complex
YGL150C	INO80	Ino80p complex
YDL002C	NHP10	Ino80p complex
YDR190C	RVB1	Ino80p complex
YPL235W	RVB2	Ino80p complex
YPL129W	TAF14	Ino80p complex
YLL010C	PSR1	Psr1p/Whi2p complex	12090248	"Two-hybrid,Affinity Capture-Western"	-	-	0
YOR043W	WHI2	Psr1p/Whi2p complex
YPL042C	SSN3	Kornberg's mediator (SRB) complex	15477388	"Affinity Capture-Western,Two-hybrid"	GO:0000119	mediator complex	0.730769230769231
YNL025C	SSN8	Kornberg's mediator (SRB) complex
YCR081W	SRB8	Kornberg's mediator (SRB) complex
YDR443C	SSN2	Kornberg's mediator (SRB) complex
YNR010W	CSE2	Kornberg's mediator (SRB) complex
YOL051W	GAL11	Kornberg's mediator (SRB) complex
YPR070W	MED1	Kornberg's mediator (SRB) complex
YMR112C	MED11	Kornberg's mediator (SRB) complex
YDL005C	MED2	Kornberg's mediator (SRB) complex
YOR174W	MED4	Kornberg's mediator (SRB) complex
YHR058C	MED6	Kornberg's mediator (SRB) complex
YOL135C	MED7	Kornberg's mediator (SRB) complex
YBR193C	MED8	Kornberg's mediator (SRB) complex
YGL151W	NUT1	Kornberg's mediator (SRB) complex
YPR168W	NUT2	Kornberg's mediator (SRB) complex
YGL025C	PGD1	Kornberg's mediator (SRB) complex
YLR071C	RGR1	Kornberg's mediator (SRB) complex
YBL093C	ROX3	Kornberg's mediator (SRB) complex
YNL236W	SIN4	Kornberg's mediator (SRB) complex
YHR041C	SRB2	Kornberg's mediator (SRB) complex
YER022W	SRB4	Kornberg's mediator (SRB) complex
YGR104C	SRB5	Kornberg's mediator (SRB) complex
YBR253W	SRB6	Kornberg's mediator (SRB) complex
YDR308C	SRB7	Kornberg's mediator (SRB) complex
YGL127C	SOH1	Kornberg's mediator (SRB) complex
YER072W	VTC1	VTC heterotetrameric complex	11823419	Affinity Capture-MS	GO:0033254	vacuolar transporter chaperone complex	1
YFL004W	VTC2	VTC heterotetrameric complex
YPL019C	VTC3	VTC heterotetrameric complex
YJL012C	VTC4	VTC heterotetrameric complex
YJL002C	OST1	oligosaccharyl transferase complex	9435788	Affinity Capture-MS	GO:0008250	oligosaccharyltransferase complex	1
YOR103C	OST2	oligosaccharyl transferase complex
YOR085W	OST3	oligosaccharyl transferase complex
YDL232W	OST4	oligosaccharyl transferase complex
YGL226C-A	OST5	oligosaccharyl transferase complex
YML019W	OST6	oligosaccharyl transferase complex
YGL022W	STT3	oligosaccharyl transferase complex
YMR149W	SWP1	oligosaccharyl transferase complex
YEL002C	WBP1	oligosaccharyl transferase complex
YLR226W	BUR2	Sgv1p/Bur2p complex	10982824	"Two-hybrid,Affinity Capture-Western"	-	-	0
YPR161C	SGV1	Sgv1p/Bur2p complex
YHR186C	KOG1	TORC 1 complex	14736892	"Affinity Capture-Western,Affinity Capture-MS"	GO:0031931	TORC1 complex	0.8
YNL006W	LST8	TORC 1 complex
YPL180W	TCO89	TORC 1 complex
YJR066W	TOR1	TORC 1 complex
YPR034W	ARP7	SWI/SNF complex	15506919	"Affinity Capture-Western,Affinity Capture-MS"	GO:0016514	SWI/SNF complex	1
YMR033W	ARP9	SWI/SNF complex
YGR275W	RTT102	SWI/SNF complex
YDR073W	SNF11	SWI/SNF complex
YNR023W	SNF12	SWI/SNF complex
YOR290C	SNF2	SWI/SNF complex
YBR289W	SNF5	SWI/SNF complex
YHL025W	SNF6	SWI/SNF complex
YPL016W	SWI1	SWI/SNF complex
YJL176C	SWI3	SWI/SNF complex
YPL129W	TAF14	SWI/SNF complex
YFL049W	SWP82	SWI/SNF complex
YDR054C	CDC34	SCF-CDC4 complex	10445024	"Affinity Capture-Western,Reconstituted Complex"	GO:0019005	SCF ubiquitin ligase complex	0.285714285714286
YFL009W	CDC4	SCF-CDC4 complex
YDL132W	CDC53	SCF-CDC4 complex
YOR057W	SGT1	SCF-CDC4 complex
YDR328C	SKP1	SCF-CDC4 complex
YDL088C	ASM4	karyopherin docking subcomplex of the Nuclear Pore Complex (NPC)	9864357	Affinity Capture-Western	GO:0005643	nuclear pore	0.0612244897959184
YBL079W	NUP170	karyopherin docking subcomplex of the Nuclear Pore Complex (NPC)
YMR153W	NUP53	karyopherin docking subcomplex of the Nuclear Pore Complex (NPC)
YDL102W	POL3	DNA polymerase delta complex	9677406	"Co-purification, Reconstituted Complex"	GO:0043625	delta DNA polymerase complex	1
YJR006W	POL31	DNA polymerase delta complex
YJR043C	POL32	DNA polymerase delta complex
YOL139C	CDC33	eIF4F	8336723	Affinity Capture-Western	GO:0016281	eukaryotic translation initiation factor 4F complex	0.6
YKR059W	TIF1	eIF4F
YGR162W	TIF4631	eIF4F
YDL013W	SLX5	Slx5p/Slx8p complex	17848550	Biochemical Activity	GO:0000151	ubiquitin ligase complex	0.2
YER116C	SLX8	Slx5p/Slx8p complex
YPR175W	DPB2	DNA polymerase epsilon complex	2406268	Co-purification	GO:0008622	epsilon DNA polymerase complex	0.8
YBR278W	DPB3	DNA polymerase epsilon complex
YDR121W	DPB4	DNA polymerase epsilon complex
YNL262W	POL2	DNA polymerase epsilon complex
YMR012W	CLU1	eIF3	10358023	"Affinity Capture-Western,Two-hybrid,Reconstituted Complex"	GO:0005852	eukaryotic translation initiation factor 3 complex	1
YLR192C	HCR1	eIF3
YMR309C	NIP1	eIF3
YOR361C	PRT1	eIF3
YBR079C	RPG1	eIF3
YMR146C	TIF34	eIF3
YDR429C	TIF35	eIF3
YDR252W	BTT1	nascent polypeptide-associated complex	10219998	"Affinity Capture-Western,Co-purification"	GO:0005854	nascent polypeptide-associated complex	1
YPL037C	EGD1	nascent polypeptide-associated complex
YHR193C	EGD2	nascent polypeptide-associated complex
YGL094C	PAN2	PAN complex	8816488	"Two-hybrid,Affinity Capture-Western,Co-purification"	GO:0031251	PAN complex	1
YKL025C	PAN3	PAN complex
YKL135C	APL2	AP-1 adaptor complex	10564262	Affinity Capture-Western	GO:0030121	AP-1 adaptor complex	1
YPR029C	APL4	AP-1 adaptor complex
YPL259C	APM1	AP-1 adaptor complex
YHL019C	APM2	AP-1 adaptor complex
YLR170C	APS1	AP-1 adaptor complex
YMR284W	YKU70	Ku complex	8509423	Co-purification	GO:0043564	Ku70:Ku80 complex	1
YMR106C	YKU80	Ku complex
YDR159W	SAC3	Sac3p/Thp1p complex	12411502	Affinity Capture-Western	GO:0005643	nuclear pore	0.0408163265306122
YOL072W	THP1	Sac3p/Thp1p complex
YPL248C	GAL4	GAL4p/GAL80p complex	11179228	Reconstituted Complex	-	-	0
YML051W	GAL80	GAL4p/GAL80p complex
YIL072W	HOP1	Synaptonemal complex (SC)	10958662	Two-hybrid	-	-	0
YLR263W	RED1	Synaptonemal complex (SC)
YDR285W	ZIP1	Synaptonemal complex (SC)
YGL249W	ZIP2	Synaptonemal complex (SC)
YEL053C	MAK10	NatC complex	10504710	Affinity Capture-MS	GO:0031417	NatC complex	1
YPR051W	MAK3	NatC complex
YCR020C-A	MAK31	NatC complex
YMR275C	BUL1	Rsp5p/Bul1 ubiquitin ligase complex	8668140	"Two-hybrid,Affinity Capture-Western"	GO:0000151	ubiquitin ligase complex	0.2
YER125W	RSP5	Rsp5p/Bul1 ubiquitin ligase complex
YOL149W	DCP1	Decapping Enzyme Complex	10508173	Affinity Capture-Western	GO:0000932	cytoplasmic mRNA processing body	0.133333333333333
YNL118C	DCP2	Decapping Enzyme Complex
YHR013C	ARD1	NatA complex	14517307	Affinity Capture-Western	GO:0031415	NatA complex	1
YDL040C	NAT1	NatA complex
YOR253W	NAT5	NatA complex
YOR144C	ELG1	DNA replication factor C complex (Elg1p)	12912927	Affinity Capture-Western	GO:0031391	Elg1 RFC-like complex	1
YJR068W	RFC2	DNA replication factor C complex (Elg1p)
YNL290W	RFC3	DNA replication factor C complex (Elg1p)
YOL094C	RFC4	DNA replication factor C complex (Elg1p)
YBR087W	RFC5	DNA replication factor C complex (Elg1p)
YML102W	CAC2	chromatin assembly complex	9030687	Co-purification	GO:0033186	CAF-1 complex	1
YBR195C	MSI1	chromatin assembly complex
YPR018W	RLF2	chromatin assembly complex
YGL200C	EMP24	COPII	10359606	"Affinity Capture-Western,Co-purification"	GO:0030127	COPII vesicle coat	0.461538461538462
YAR002C-A	ERP1	COPII
YAL007C	ERP2	COPII
YML012W	ERV25	COPII
YAL042W	ERV46	COPII
YPL218W	SAR1	COPII
YLR208W	SEC13	COPII
YPL085W	SEC16	COPII
YPR181C	SEC23	COPII
YIL109C	SEC24	COPII
YDL195W	SEC31	COPII
YFL005W	SEC4	Sro1p/Sec4p/Sec9p complex	16390997	"Affinity Capture-Western,Reconstituted Complex,Affinity Capture-MS"	GO:0031201	SNARE complex	0.2
YGR009C	SEC9	Sro1p/Sec4p/Sec9p complex
YPR032W	SRO7	Sro1p/Sec4p/Sec9p complex
YDL056W	MBP1	MBF complex	8372350	Co-purification	-	-	0
YLR182W	SWI6	MBF complex
YDL132W	CDC53	nuclear ubiquitin ligase complex	14747994	Reconstituted Complex	GO:0019005	SCF ubiquitin ligase complex	0.307692307692308
YJR090C	GRR1	nuclear ubiquitin ligase complex
YOL133W	HRT1	nuclear ubiquitin ligase complex
YDR328C	SKP1	nuclear ubiquitin ligase complex
YBR091C	MRS5	mitochondrial inner membrane protein insertion complex	10637294	Affinity Capture-Western	GO:0042721	mitochondrial inner membrane protein insertion complex	1
YOR297C	TIM18	mitochondrial inner membrane protein insertion complex
YDL217C	TIM22	mitochondrial inner membrane protein insertion complex
YJL054W	TIM54	mitochondrial inner membrane protein insertion complex
YGL195W	GCN1	Gcn1p/Gcn20p complex	7621831	"Affinity Capture-Western, Two-hybrid"	GO:0022626	cytosolic ribosome	0.166666666666667
YFR009W	GCN20	Gcn1p/Gcn20p complex
YJL053W	PEP8	retromer complex	9700157	"Affinity Capture-Western,Reconstituted Complex,Co-purification"	GO:0030904	retromer complex	1
YOR132W	VPS17	retromer complex
YHR012W	VPS29	retromer complex
YJL154C	VPS35	retromer complex
YOR069W	VPS5	retromer complex
YGL223C	COG1	Golgi transport complex	11703943	Affinity Capture-MS	GO:0017119	Golgi transport complex	1
YGR120C	COG2	Golgi transport complex
YER157W	COG3	Golgi transport complex
YPR105C	COG4	Golgi transport complex
YNL051W	COG5	Golgi transport complex
YNL041C	COG6	Golgi transport complex
YGL005C	COG7	Golgi transport complex
YML071C	COG8	Golgi transport complex
YGR098C	ESP1	Esp1p/Pds1p complex	9635435	Affinity Capture-Western	-	-	0
YDR113C	PDS1	Esp1p/Pds1p complex
YGR238C	KEL2	Kel1p/Kel2p/Lte1p complex	12234925	Affinity Capture-Western	-	-	0
YHR158C	KEL1	Kel1p/Kel2p/Lte1p complex
YAL024C	LTE1	Kel1p/Kel2p/Lte1p complex
YBR009C	HHF1	Nucleosomal protein complex	9256430	Reconstituted Complex	GO:0000788	nuclear nucleosome	0.8
YNL030W	HHF2	Nucleosomal protein complex
YBR010W	HHT1	Nucleosomal protein complex
YNL031C	HHT2	Nucleosomal protein complex
YDR225W	HTA1	Nucleosomal protein complex
YBL003C	HTA2	Nucleosomal protein complex
YDR224C	HTB1	Nucleosomal protein complex
YBL002W	HTB2	Nucleosomal protein complex
YGL020C	GET1	GET complex	16269340	Affinity Capture-MS	GO:0043529	GET complex	1
YER083C	GET2	GET complex
YDL100C	GET3	GET complex
YBR160W	CDC28	Cdc28p/Cln2p complex	2142620	Co-purification	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.142857142857143
YPL256C	CLN2	Cdc28p/Cln2p complex
YJR063W	RPA12	DNA-directed RNA polymerase I complex	8334985	Co-crystal Structure	GO:0005736	DNA-directed RNA polymerase I complex	1
YPR010C	RPA135	DNA-directed RNA polymerase I complex
YDR156W	RPA14	DNA-directed RNA polymerase I complex
YOR341W	RPA190	DNA-directed RNA polymerase I complex
YJL148W	RPA34	DNA-directed RNA polymerase I complex
YOR340C	RPA43	DNA-directed RNA polymerase I complex
YNL248C	RPA49	DNA-directed RNA polymerase I complex
YOR210W	RPB10	DNA-directed RNA polymerase I complex
YBR154C	RPB5	DNA-directed RNA polymerase I complex
YOR224C	RPB8	DNA-directed RNA polymerase I complex
YHR143W-A	RPC10	DNA-directed RNA polymerase I complex
YNL113W	RPC19	DNA-directed RNA polymerase I complex
YPR110C	RPC40	DNA-directed RNA polymerase I complex
YPR187W	RPO26	DNA-directed RNA polymerase I complex
YAL051W	OAF1	OAF complex	9288897	Co-localization	-	-	0
YOR363C	PIP2	OAF complex
YBL099W	ATP1	F0/F1 ATP synthase (complex V)	9857174	Co-purification	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	0.5
YLR295C	ATP14	F0/F1 ATP synthase (complex V)
YPL271W	ATP15	F0/F1 ATP synthase (complex V)
YDL004W	ATP16	F0/F1 ATP synthase (complex V)
YDR377W	ATP17	F0/F1 ATP synthase (complex V)
YML081C-A	ATP18	F0/F1 ATP synthase (complex V)
YOL077W-A	ATP19	F0/F1 ATP synthase (complex V)
YJR121W	ATP2	F0/F1 ATP synthase (complex V)
YPR020W	ATP20	F0/F1 ATP synthase (complex V)
YBR039W	ATP3	F0/F1 ATP synthase (complex V)
YPL078C	ATP4	F0/F1 ATP synthase (complex V)
YDR298C	ATP5	F0/F1 ATP synthase (complex V)
Q0085	ATP6	F0/F1 ATP synthase (complex V)
YKL016C	ATP7	F0/F1 ATP synthase (complex V)
Q0080	ATP8	F0/F1 ATP synthase (complex V)
YDL181W	INH1	F0/F1 ATP synthase (complex V)
Q0130	OLI1	F0/F1 ATP synthase (complex V)
YDR322C-A	TIM11	F0/F1 ATP synthase (complex V)
YCR046C	IMG1	mitochondrial ribosomal large subunit	12392552	Affinity Capture-MS	GO:0005762	mitochondrial large ribosomal subunit	0.934782608695652
YCR071C	IMG2	mitochondrial ribosomal large subunit
YGL068W	MNP1	mitochondrial ribosomal large subunit
YDR405W	MRP20	mitochondrial ribosomal large subunit
YKL167C	MRP49	mitochondrial ribosomal large subunit
YNL005C	MRP7	mitochondrial ribosomal large subunit
YDR116C	MRPL1	mitochondrial ribosomal large subunit
YNL284C	MRPL10	mitochondrial ribosomal large subunit
YDL202W	MRPL11	mitochondrial ribosomal large subunit
YKR006C	MRPL13	mitochondrial ribosomal large subunit
YLR312W-A	MRPL15	mitochondrial ribosomal large subunit
YBL038W	MRPL16	mitochondrial ribosomal large subunit
YNL252C	MRPL17	mitochondrial ribosomal large subunit
YNL185C	MRPL19	mitochondrial ribosomal large subunit
YKR085C	MRPL20	mitochondrial ribosomal large subunit
YNL177C	MRPL22	mitochondrial ribosomal large subunit
YOR150W	MRPL23	mitochondrial ribosomal large subunit
YMR193W	MRPL24	mitochondrial ribosomal large subunit
YGR076C	MRPL25	mitochondrial ribosomal large subunit
YBR282W	MRPL27	mitochondrial ribosomal large subunit
YDR462W	MRPL28	mitochondrial ribosomal large subunit
YMR024W	MRPL3	mitochondrial ribosomal large subunit
YKL138C	MRPL31	mitochondrial ribosomal large subunit
YCR003W	MRPL32	mitochondrial ribosomal large subunit
YMR286W	MRPL33	mitochondrial ribosomal large subunit
YDR322W	MRPL35	mitochondrial ribosomal large subunit
YBR122C	MRPL36	mitochondrial ribosomal large subunit
YBR268W	MRPL37	mitochondrial ribosomal large subunit
YKL170W	MRPL38	mitochondrial ribosomal large subunit
YML009C	MRPL39	mitochondrial ribosomal large subunit
YLR439W	MRPL4	mitochondrial ribosomal large subunit
YPL173W	MRPL40	mitochondrial ribosomal large subunit
YMR225C	MRPL44	mitochondrial ribosomal large subunit
YJL096W	MRPL49	mitochondrial ribosomal large subunit
YNR022C	MRPL50	mitochondrial ribosomal large subunit
YPR100W	MRPL51	mitochondrial ribosomal large subunit
YHR147C	MRPL6	mitochondrial ribosomal large subunit
YDR237W	MRPL7	mitochondrial ribosomal large subunit
YJL063C	MRPL8	mitochondrial ribosomal large subunit
YGR220C	MRPL9	mitochondrial ribosomal large subunit
YEL050C	RML2	mitochondrial ribosomal large subunit
YDR115W	YDR115W	mitochondrial ribosomal large subunit
YML025C	YML6	mitochondrial ribosomal large subunit
YPL183W-A	YPL183W-A	mitochondrial ribosomal large subunit
YHR060W	VMA22	ER V-ATPase assembly complex	9660861	Co-purification	-	-	0
YKL119C	VPH2	ER V-ATPase assembly complex
YBR050C	REG2	Reg2p/Glc7p complex	8649403	"Affinity Capture-Western,Two-hybrid"	GO:0000164	protein phosphatase type 1 complex	0.285714285714286
YER133W	GLC7	Reg2p/Glc7p complex
YER029C	SMB1	U5 snRNP complex	11720284	Affinity Capture-MS	GO:0005682	snRNP U5	0.823529411764706
YGR074W	SMD1	U5 snRNP complex
YLR275W	SMD2	U5 snRNP complex
YLR147C	SMD3	U5 snRNP complex
YOR159C	SME1	U5 snRNP complex
YFL017W-A	SMX2	U5 snRNP complex
YPR182W	SMX3	U5 snRNP complex
YKL173W	SNU114	U5 snRNP complex
YBL074C	AAR2	U5 snRNP complex
YER172C	BRR2	U5 snRNP complex
YHR165C	PRP8	U5 snRNP complex
YDR243C	PRP28	U5 snRNP complex
YHR156C	LIN1	U5 snRNP complex
YPR082C	DIB1	U5 snRNP complex
YCR066W	RAD18	Rad6p/Rad18p complex	9287349	"Affinity Capture-Western,Reconstituted Complex"	GO:0000502	proteasome complex	0.0909090909090909
YGL058W	RAD6	Rad6p/Rad18p complex
YGL087C	MMS2	ubiquitin conjugating enzyme complex	10089880	"Reconstituted Complex,Co-purification"	GO:0031371	ubiquitin conjugating enzyme complex	1
YDR092W	UBC13	ubiquitin conjugating enzyme complex
YCR009C	RVS161	Rvs161p/Rvs167p complex	11096097	"Two-hybrid,Affinity Capture-Western"	-	-	0
YDR388W	RVS167	Rvs161p/Rvs167p complex
YML105C	SEC65	Signal recognition particle (SRP)	7925282	Co-purification	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	0.857142857142857
YDL092W	SRP14	Signal recognition particle (SRP)
YKL122C	SRP21	Signal recognition particle (SRP)
YPR088C	SRP54	Signal recognition particle (SRP)
YPL243W	SRP68	Signal recognition particle (SRP)
YPL210C	SRP72	Signal recognition particle (SRP)
YMR042W	ARG80	ARGR complex	10632874	Two-hybrid	-	-	0
YML099C	ARG81	ARGR complex
YDR173C	ARG82	ARGR complex
YMR043W	MCM1	ARGR complex
YGL033W	HOP2	Hop2p/Mnd1p complex	11940665	Affinity Capture-Western	-	-	0
YGL183C	MND1	Hop2p/Mnd1p complex
YPL004C	LSP1	Eisosome	16496001	Affinity Capture-MS	GO:0032126	eisosome	1
YGR086C	PIL1	Eisosome
YIL142W	CCT2	chaperonin-containing T-complex	7908441	Co-purification	GO:0005832	chaperonin-containing T-complex	1
YJL014W	CCT3	chaperonin-containing T-complex
YDL143W	CCT4	chaperonin-containing T-complex
YJR064W	CCT5	chaperonin-containing T-complex
YDR188W	CCT6	chaperonin-containing T-complex
YJL111W	CCT7	chaperonin-containing T-complex
YJL008C	CCT8	chaperonin-containing T-complex
YDR212W	TCP1	chaperonin-containing T-complex
YDR138W	HPR1	THO complex	11060033	Affinity Capture-Western	GO:0000446	nucleoplasmic THO complex	1
YML062C	MFT1	THO complex
YNL139C	RLR1	THO complex
YHR167W	THP2	THO complex
YDR180W	SCC2	cohesin loading factor complex	10882066	Affinity Capture-MS	GO:0032116	cohesin loading complex	1
YER147C	SCC4	cohesin loading factor complex
YPL219W	PCL8	Pho85p/Pcl8p complex	9032248	Two-hybrid	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.142857142857143
YPL031C	PHO85	Pho85p/Pcl8p complex
YKR054C	DYN1	cytoplasmic dynein complex	15642746	Affinity Capture-Western	GO:0005868	cytoplasmic dynein complex	1
YDR424C	DYN2	cytoplasmic dynein complex
YMR299C	DYN3	cytoplasmic dynein complex
YDR488C	PAC11	cytoplasmic dynein complex
YGL047W	ALG13	UDP-N-acetylglucosamine transferase complex	16100113	Co-purification	GO:0043541	UDP-N-acetylglucosamine transferase complex	1
YBR070C	ALG14	UDP-N-acetylglucosamine transferase complex
YLR398C	SKI2	Ski Complex	18042677	Affinity Capture-MS	-	-	0
YPR189W	SKI3	Ski Complex
YGL213C	SKI8	Ski Complex
YPL129W	TAF14	transcription factor TFIIF complex	15896708	"Affinity Capture-Western,Two-hybrid,Reconstituted Complex"	GO:0005674	transcription factor TFIIF complex	1
YGR186W	TFG1	transcription factor TFIIF complex
YGR005C	TFG2	transcription factor TFIIF complex
YJR033C	RAV1	RAVE complex	11283612	Affinity Capture-Western	GO:0043291	RAVE complex	1
YDR202C	RAV2	RAVE complex
YDR328C	SKP1	RAVE complex
YPL094C	SEC62	Sec62p/Sec63p complex	2000150	Affinity Capture-Western	GO:0031207	Sec62/Sec63 complex	1
YOR254C	SEC63	Sec62p/Sec63p complex
YBR171W	SEC66	Sec62p/Sec63p complex
YLR292C	SEC72	Sec62p/Sec63p complex
YGR200C	ELP2	Elongator complex	11689709	Affinity Capture-MS	GO:0033588	Elongator holoenzyme complex	1
YPL086C	ELP3	Elongator complex
YPL101W	ELP4	Elongator complex
YMR312W	ELP6	Elongator complex
YHR187W	IKI1	Elongator complex
YLR384C	IKI3	Elongator complex
YJR082C	EAF6	NuA3 histone acetyltransferase complex	12077334	Affinity Capture-MS	GO:0033100	NuA3 histone acetyltransferase complex	1
YBL052C	SAS3	NuA3 histone acetyltransferase complex
YPL129W	TAF14	NuA3 histone acetyltransferase complex
YOR064C	YNG1	NuA3 histone acetyltransferase complex
YPR031W	NTO1	NuA3 histone acetyltransferase complex
YBR128C	ATG14	phosphatidylinositol (PtdIns) 3-kinase complex (functions in autophagy)	11157979	"Affinity Capture-Western,Affinity Capture-MS"	-	-	0
YBR097W	VPS15	phosphatidylinositol (PtdIns) 3-kinase complex (functions in autophagy)
YPL120W	VPS30	phosphatidylinositol (PtdIns) 3-kinase complex (functions in autophagy)
YLR240W	VPS34	phosphatidylinositol (PtdIns) 3-kinase complex (functions in autophagy)
YER025W	GCD11	eIF2	8417348	Co-purification	GO:0005850	eukaryotic translation initiation factor 2 complex	1
YJR007W	SUI2	eIF2
YPL237W	SUI3	eIF2
YGR181W	TIM13	Tim8p/Tim13p complex	12221072	Reconstituted Complex	GO:0042719	mitochondrial intermembrane space protein transporter complex	0.5
YJR135W-A	TIM8	Tim8p/Tim13p complex
YOR217W	RFC1	DNA replication factor C complex (Rcf1p)	7651383	Co-purification	GO:0005663	DNA replication factor C complex	0.833333333333333
YJR068W	RFC2	DNA replication factor C complex (Rcf1p)
YNL290W	RFC3	DNA replication factor C complex (Rcf1p)
YOL094C	RFC4	DNA replication factor C complex (Rcf1p)
YBR087W	RFC5	DNA replication factor C complex (Rcf1p)
YIL125W	KGD1	mitochondrial oxoglutarate dehydrogenase complex	2072900	Co-purification	GO:0009353	mitochondrial oxoglutarate dehydrogenase complex	1
YDR148C	KGD2	mitochondrial oxoglutarate dehydrogenase complex
YFL018C	LPD1	mitochondrial oxoglutarate dehydrogenase complex
YBR211C	AME1	COMA complex	14633972	"Affinity Capture-Western,Co-purification"	GO:0000817	COMA complex	1
YPL018W	CTF19	COMA complex
YDR318W	MCM21	COMA complex
YGR179C	OKP1	COMA complex
YOL076W	MDM20	NatB complex	12783868	Affinity Capture-Western	GO:0031416	NatB complex	1
YPR131C	NAT3	NatB complex
YBR109C	CMD1	SPB components	15872084	FRET	-	-	0
YNL225C	CNM67	SPB components
YOR373W	NUD1	SPB components
YDR356W	SPC110	SPB components
YPL124W	SPC29	SPB components
YKL042W	SPC42	SPB components
YAL047C	SPC72	SPB components
YML029W	USA1	ubiquitin ligase ERAD-L complex	16873066	Affinity Capture-MS	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex	0.8
YBR201W	DER1	ubiquitin ligase ERAD-L complex
YDR057W	YOS9	ubiquitin ligase ERAD-L complex
YOL013C	HRD1	ubiquitin ligase ERAD-L complex
YLR207W	HRD3	ubiquitin ligase ERAD-L complex
YGR206W	MVB12	ESCRT I complex	11511343	Affinity Capture-Western	GO:0000813	ESCRT I complex	1
YLR119W	SRN2	ESCRT I complex
YCL008C	STP22	ESCRT I complex
YPL065W	VPS28	ESCRT I complex
YPL001W	HAT1	HAT-B complex	14761951	Two-hybrid	GO:0000123	histone acetyltransferase complex	0.333333333333333
YEL056W	HAT2	HAT-B complex
YLL022C	HIF1	HAT-B complex
YJL005W	CYR1	adenylyl cyclase complex	2455217	Affinity Capture-Western	-	-	0
YNL138W	SRV2	adenylyl cyclase complex
YDR265W	PEX10	RING finger peroxin complex	12667447	Affinity Capture-Western	-	-	0
YMR026C	PEX12	RING finger peroxin complex
YJL210W	PEX2	RING finger peroxin complex
YMR108W	ILV2	acetolactate synthase complex	10213630	Reconstituted Complex	GO:0005948	acetolactate synthase complex	1
YCL009C	ILV6	acetolactate synthase complex
YGR132C	PHB1	prohibitin complex	15525670	Affinity Capture-Western	-	-	0
YGR231C	PHB2	prohibitin complex
YHL002W	HSE1	Hse1p/Vps27p complex	12055639	Affinity Capture-Western	GO:0033565	ESCRT-0 complex	1
YNR006W	VPS27	Hse1p/Vps27p complex
YGL190C	CDC55	protein phosphatase type 2A complex (Cdc55p)	10329624	Affinity Capture-Western	GO:0000159	protein phosphatase type 2A complex	0.5
YDL134C	PPH21	protein phosphatase type 2A complex (Cdc55p)
YAL016W	TPD3	protein phosphatase type 2A complex (Cdc55p)
YOL096C	COQ3	Q-biosynthetic Coq polypeptide complex	15792955	"Affinity Capture-Western,Co-purification"	-	-	0
YDR204W	COQ4	Q-biosynthetic Coq polypeptide complex
YBR160W	CDC28	Cdc28p/Clb1p complex	8319908	Traceable author statement	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.0666666666666667
YGR108W	CLB1	Cdc28p/Clb1p complex
YER172C	BRR2	U4/U6 x U5 tri-snRNP complex	11720284	Affinity Capture-MS	GO:0046540	U4/U6 x U5 tri-snRNP complex	0.875
YPR082C	DIB1	U4/U6 x U5 tri-snRNP complex
YBL026W	LSM2	U4/U6 x U5 tri-snRNP complex
YLR438C-A	LSM3	U4/U6 x U5 tri-snRNP complex
YER112W	LSM4	U4/U6 x U5 tri-snRNP complex
YER146W	LSM5	U4/U6 x U5 tri-snRNP complex
YDR378C	LSM6	U4/U6 x U5 tri-snRNP complex
YNL147W	LSM7	U4/U6 x U5 tri-snRNP complex
YJR022W	LSM8	U4/U6 x U5 tri-snRNP complex
YGR006W	PRP18	U4/U6 x U5 tri-snRNP complex
YDR473C	PRP3	U4/U6 x U5 tri-snRNP complex
YGR091W	PRP31	U4/U6 x U5 tri-snRNP complex
YGR075C	PRP38	U4/U6 x U5 tri-snRNP complex
YPR178W	PRP4	U4/U6 x U5 tri-snRNP complex
YBR055C	PRP6	U4/U6 x U5 tri-snRNP complex
YHR165C	PRP8	U4/U6 x U5 tri-snRNP complex
YER029C	SMB1	U4/U6 x U5 tri-snRNP complex
YGR074W	SMD1	U4/U6 x U5 tri-snRNP complex
YLR275W	SMD2	U4/U6 x U5 tri-snRNP complex
YLR147C	SMD3	U4/U6 x U5 tri-snRNP complex
YOR159C	SME1	U4/U6 x U5 tri-snRNP complex
YFL017W-A	SMX2	U4/U6 x U5 tri-snRNP complex
YPR182W	SMX3	U4/U6 x U5 tri-snRNP complex
YKL173W	SNU114	U4/U6 x U5 tri-snRNP complex
YEL026W	SNU13	U4/U6 x U5 tri-snRNP complex
YDL098C	SNU23	U4/U6 x U5 tri-snRNP complex
YOR308C	SNU66	U4/U6 x U5 tri-snRNP complex
YBR152W	SPP381	U4/U6 x U5 tri-snRNP complex
YCL044C	MGR1	i-AAA complex	16267274	"Affinity Capture-Western,Co-purification"	GO:0031942	i-AAA complex	1
YPR024W	YME1	i-AAA complex
YOL090W	MSH2	MSH2p/MSH3p complex	8805366	Reconstituted Complex	GO:0032302	MutSbeta complex	1
YCR092C	MSH3	MSH2p/MSH3p complex
YFR028C	CDC14	RENT complex	10219244	Affinity Capture-Western	GO:0030869	RENT complex	1
YJL076W	NET1	RENT complex
YDL042C	SIR2	RENT complex
YJL088W	ARG3	Car1p/Arg3p complex	2404017	Co-purification	-	-	0
YPL111W	CAR1	Car1p/Arg3p complex
YJL041W	NSP1	Nsp1p/Nup82p complex	7559750	Affinity Capture-Western	GO:0005643	nuclear pore	0.0408163265306122
YJL061W	NUP82	Nsp1p/Nup82p complex
YJL071W	ARG2	"Arg2p/Arg5,6p complex"	11553611	Affinity Capture-Western	-	-	0
YER069W	"ARG5,6"	"Arg2p/Arg5,6p complex"
YGR063C	SPT4	DSIF complex	9450930	Affinity Capture-Western	GO:0032044	DSIF complex	1
YML010W	SPT5	DSIF complex
YLR342W	FKS1	"1,3-beta-glucan synthase complex (Fks1p/Rho1p)"	8602515	Co-purification	GO:0000148	1,3-beta-glucan synthase complex	0.666666666666667
YPR165W	RHO1	"1,3-beta-glucan synthase complex (Fks1p/Rho1p)"
YOR207C	RET1	DNA-directed RNA polymerase III complex	10066472	Affinity Capture-Western	GO:0005666	DNA-directed RNA polymerase III complex	1
YOR210W	RPB10	DNA-directed RNA polymerase III complex
YBR154C	RPB5	DNA-directed RNA polymerase III complex
YOR224C	RPB8	DNA-directed RNA polymerase III complex
YHR143W-A	RPC10	DNA-directed RNA polymerase III complex
YDR045C	RPC11	DNA-directed RNA polymerase III complex
YJL011C	RPC17	DNA-directed RNA polymerase III complex
YNL113W	RPC19	DNA-directed RNA polymerase III complex
YKL144C	RPC25	DNA-directed RNA polymerase III complex
YNL151C	RPC31	DNA-directed RNA polymerase III complex
YNR003C	RPC34	DNA-directed RNA polymerase III complex
YKR025W	RPC37	DNA-directed RNA polymerase III complex
YPR110C	RPC40	DNA-directed RNA polymerase III complex
YDL150W	RPC53	DNA-directed RNA polymerase III complex
YPR190C	RPC82	DNA-directed RNA polymerase III complex
YPR187W	RPO26	DNA-directed RNA polymerase III complex
YOR116C	RPO31	DNA-directed RNA polymerase III complex
YML069W	POB3	FACT complex	9705338	Co-purification	GO:0035101	FACT complex	1
YGL207W	SPT16	FACT complex
YNL085W	MKT1	Mtk1p/Pbp1p complex	15082763	Two-hybrid	GO:0005844	polysome	0.142857142857143
YGR178C	PBP1	Mtk1p/Pbp1p complex
YGR240C	PFK1	6-phosphofructokinase complex	9559541	Reconstituted Complex	GO:0005945	6-phosphofructokinase complex	1
YMR205C	PFK2	6-phosphofructokinase complex
YMR078C	CTF18	DNA replication factor C complex (Ctf18p/Ctf8p/dcc1p)	11389843	Affinity Capture-Western	GO:0031390	Ctf18 RFC-like complex	1
YHR191C	CTF8	DNA replication factor C complex (Ctf18p/Ctf8p/dcc1p)
YCL016C	DCC1	DNA replication factor C complex (Ctf18p/Ctf8p/dcc1p)
YJR068W	RFC2	DNA replication factor C complex (Ctf18p/Ctf8p/dcc1p)
YNL290W	RFC3	DNA replication factor C complex (Ctf18p/Ctf8p/dcc1p)
YOL094C	RFC4	DNA replication factor C complex (Ctf18p/Ctf8p/dcc1p)
YBR087W	RFC5	DNA replication factor C complex (Ctf18p/Ctf8p/dcc1p)
YER038C	KRE29	smc5p-Smc6p complex	15738391	"Biochemical Activity,Affinity Capture-MS"	GO:0030915	Smc5-Smc6 complex	1
YEL019C	MMS21	smc5p-Smc6p complex
YLR007W	NSE1	smc5p-Smc6p complex
YDR288W	NSE3	smc5p-Smc6p complex
YDL105W	NSE4	smc5p-Smc6p complex
YML023C	NSE5	smc5p-Smc6p complex
YOL034W	SMC5	smc5p-Smc6p complex
YLR383W	SMC6	smc5p-Smc6p complex
YER030W	CHZ1	Chz1p/Htz1p/Htb1p complex	17289584	"Affinity Capture-Western,Affinity Capture-MS"	GO:0005678	chromatin assembly complex	0.5
YDR224C	HTB1	Chz1p/Htz1p/Htb1p complex
YOL012C	HTZ1	Chz1p/Htz1p/Htb1p complex
YNL039W	BDP1	transcription factor TFIIIB complex	1458536	Reconstituted Complex	GO:0000126	transcription factor TFIIIB complex	1
YGR246C	BRF1	transcription factor TFIIIB complex
YER148W	SPT15	transcription factor TFIIIB complex
YNR038W	DBP6	Npa2p-containing subcomplex	17145778	Affinity Capture-Western	GO:0030687	preribosome, large subunit precursor	0.25
YOL144W	NOP8	Npa2p-containing subcomplex
YLR221C	RSA3	Npa2p-containing subcomplex
YKL014C	URB1	Npa2p-containing subcomplex
YJR041C	URB2	Npa2p-containing subcomplex
Q0105	COB	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"	10873857	Co-crystal Structure	GO:0005750	mitochondrial respiratory chain complex III	1
YBL045C	COR1	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"
YOR065W	CYT1	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"
YHR001W-A	QCR10	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"
YPR191W	QCR2	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"
YFR033C	QCR6	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"
YDR529C	QCR7	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"
YJL166W	QCR8	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"
YGR183C	QCR9	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"
YEL024W	RIP1	"Cytochrome bc1 complex (Ubiquinol-cytochrome c reductase complex, complex III)"
YFR040W	SAP155	Sap155p/Sit4p complex	8649382	Affinity Capture-Western	-	-	0
YDL047W	SIT4	Sap155p/Sit4p complex
YNL062C	GCD10	Gcd10p/Gcd14p complex	10779558	Co-purification	GO:0031515	tRNA (m1A) methyltransferase complex	1
YJL125C	GCD14	Gcd10p/Gcd14p complex
YHR098C	SFB3	Sfb3p/Sec23p complex	10330397	"Two-hybrid,Affinity Capture-Western"	GO:0030127	COPII vesicle coat	0.25
YPR181C	SEC23	Sfb3p/Sec23p complex
YFR030W	MET10	sulfite reductase complex (NADPH)	7788524	Co-purification	GO:0009337	sulfite reductase complex (NADPH)	1
YJR137C	ECM17	sulfite reductase complex (NADPH)
YBL016W	FUS3	STE5-MAPK complex	8062390	"Two-hybrid,Co-purification"	-	-	0
YLR362W	STE11	STE5-MAPK complex
YDR103W	STE5	STE5-MAPK complex
YDL159W	STE7	STE5-MAPK complex
YMR058W	FET3	Permease-Oxidase Complex	8599111	Biochemical Activity	GO:0033573	high affinity iron permease complex	1
YER145C	FTR1	Permease-Oxidase Complex
YER017C	AFG3	m-AAA complex	8681382	Affinity Capture-Western	GO:0005745	m-AAA complex	1
YMR089C	YTA12	m-AAA complex
YKL139W	CTK1	carboxy-terminal domain protein kinase complex	7565723	Co-purification	GO:0032806	carboxy-terminal domain protein kinase complex	1
YJL006C	CTK2	carboxy-terminal domain protein kinase complex
YML112W	CTK3	carboxy-terminal domain protein kinase complex
YBR160W	CDC28	Cdc28p/Clb6p complex	8319908	Traceable author statement	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.0666666666666667
YGR109C	CLB6	Cdc28p/Clb6p complex
YPL050C	MNN9	"alpha-1,6-mannosyltransferase complex(Van1p/Mnn9p)"	12235155	Affinity Capture-Western	GO:0000136	alpha-1,6-mannosyltransferase complex	0.333333333333333
YML115C	VAN1	"alpha-1,6-mannosyltransferase complex(Van1p/Mnn9p)"
YDL017W	CDC7	Cdc7p/Dbf4p complex	8474449	"Two-hybrid,Reconstituted Complex"	GO:0031431	Dbf4-dependent protein kinase complex	1
YDR052C	DBF4	Cdc7p/Dbf4p complex
YER070W	RNR1	ribonucleoside-diphosphate reductase complex	10716984	Reconstituted Complex	GO:0005971	ribonucleoside-diphosphate reductase complex	0.75
YJL026W	RNR2	ribonucleoside-diphosphate reductase complex
YGR180C	RNR4	ribonucleoside-diphosphate reductase complex
YGR163W	GTR2	EGO complex	15989961	"Affinity Capture-Western,Two-hybrid"	-	-	0
YKR007W	MEH1	EGO complex
YBR077C	SLM4	EGO complex
YHR172W	SPC97	gamma-tubulin complex	9384578	Affinity Capture-Western	GO:0000928	gamma-tubulin small complex, spindle pole body	1
YNL126W	SPC98	gamma-tubulin complex
YLR212C	TUB4	gamma-tubulin complex
YNL084C	END3	"actin cytoskeleton-regulatory complex, Pan1p/Sla1p/End3p complex"	10594004	"Two-hybrid,Affinity Capture-Western"	-	-	0
YIR006C	PAN1	"actin cytoskeleton-regulatory complex, Pan1p/Sla1p/End3p complex"
YBL007C	SLA1	"actin cytoskeleton-regulatory complex, Pan1p/Sla1p/End3p complex"
YDR221W	GTB1	Rot2p/Gtb1p complex	16373354	"Affinity Capture-Western,Co-purification"	GO:0017177	alpha-glucosidase II complex	1
YBR229C	ROT2	Rot2p/Gtb1p complex
YMR095C	SNO1	Sno1p/Snz1p complex	14764090	Reconstituted Complex	-	-	0
YMR096W	SNZ1	Sno1p/Snz1p complex
YNL233W	BNI4	Bni4p/Glc7p complex	12529424	"Two-hybrid,Affinity Capture-Western"	GO:0000164	protein phosphatase type 1 complex	0.125
YER133W	GLC7	Bni4p/Glc7p complex
YMR192W	GYL1	Gyl1p/Gyp5p complex	15331637	"Affinity Capture-Western, Co-localization"	-	-	0
YPL249C	GYP5	Gyl1p/Gyp5p complex
YGR134W	CAF130	CCR4-NOT core complex	11733989	"Affinity Capture-Western, Affinity Capture-MS"	GO:0030015	CCR4-NOT core complex	0.777777777777778
YNL288W	CAF40	CCR4-NOT core complex
YAL021C	CCR4	CCR4-NOT core complex
YDL165W	CDC36	CCR4-NOT core complex
YCR093W	CDC39	CCR4-NOT core complex
YER068W	MOT2	CCR4-NOT core complex
YIL038C	NOT3	CCR4-NOT core complex
YPR072W	NOT5	CCR4-NOT core complex
YNR052C	POP2	CCR4-NOT core complex
YOR106W	VAM3	Vam3p/Vam7 vacuolar tSNARE complex	9710615	Affinity Capture-Western	-	-	0
YGL212W	VAM7	Vam3p/Vam7 vacuolar tSNARE complex
YLR088W	GAA1	GPI-anchor transamidase complex	15075373	Affinity Capture-Western	GO:0042765	GPI-anchor transamidase complex	1
YLR459W	GAB1	GPI-anchor transamidase complex
YHR188C	GPI16	GPI-anchor transamidase complex
YDR434W	GPI17	GPI-anchor transamidase complex
YDR331W	GPI8	GPI-anchor transamidase complex
YNL037C	IDH1	Isocitrate dehydrogenase	11042198	Two-hybrid	GO:0005962	mitochondrial isocitrate dehydrogenase complex (NAD+)	1
YOR136W	IDH2	Isocitrate dehydrogenase
YKL182W	FAS1	fatty acid synthase complex	350874	Co-purification	GO:0005835	fatty acid synthase complex	1
YPL231W	FAS2	fatty acid synthase complex
YGL155W	CDC43	CAAX-protein geranylgeranyltransferase complex	1400380	Co-purification	GO:0005953	CAAX-protein geranylgeranyltransferase complex	1
YKL019W	RAM2	CAAX-protein geranylgeranyltransferase complex
YMR224C	MRE11	MRX complex	9845372	Affinity Capture-Western	GO:0030870	Mre11 complex	1
YNL250W	RAD50	MRX complex
YDR369C	XRS2	MRX complex
YCR086W	CSM1	Csm1p/Lrs4p complex	12689592	Affinity Capture-Western	GO:0033551	monopolin complex	0.5
YDR439W	LRS4	Csm1p/Lrs4p complex
YLL002W	RTT109	Rtt109p/Vps75p complex	17369253	Affinity Capture-Western	-	-	0
YNL246W	VPS75	Rtt109p/Vps75p complex
Q0115	BI3	Bi3 ribonucleoprotein complex	12924947	Protein-RNA	-	-	0
YIR021W	MRS1	Bi3 ribonucleoprotein complex
YJL090C	DPB11	Dpb11p/Sld2p complex	9742127	"Two-hybrid,Affinity Capture-Western"	GO:0008622	epsilon DNA polymerase complex	0.166666666666667
YKL108W	SLD2	Dpb11p/Sld2p complex
YKL185W	ASH1	Rpd3L complex	16286007	Affinity Capture-MS	GO:0000508	Rpd3L complex	1
YPL181W	CTI6	Rpd3L complex
YAL013W	DEP1	Rpd3L complex
YNL097C	PHO23	Rpd3L complex
YNL330C	RPD3	Rpd3L complex
YBR095C	RXT2	Rpd3L complex
YDL076C	RXT3	Rpd3L complex
YMR263W	SAP30	Rpd3L complex
YIL084C	SDS3	Rpd3L complex
YOL004W	SIN3	Rpd3L complex
YPL139C	UME1	Rpd3L complex
YDR207C	UME6	Rpd3L complex
YPL213W	LEA1	U2 snRNP complex	11804584	Affinity Capture-MS	GO:0005686	snRNP U2	0.578947368421053
YIR009W	MSL1	U2 snRNP complex
YML049C	RSE1	U2 snRNP complex
YMR288W	HSH155	U2 snRNP complex
YIR005W	IST3	U2 snRNP complex
YOR319W	HSH49	U2 snRNP complex
YDL030W	PRP9	U2 snRNP complex
YDL043C	PRP11	U2 snRNP complex
YJL203W	PRP21	U2 snRNP complex
YMR240C	CUS1	U2 snRNP complex
YNL286W	CUS2	U2 snRNP complex
YER029C	SMB1	U2 snRNP complex
YGR074W	SMD1	U2 snRNP complex
YLR275W	SMD2	U2 snRNP complex
YLR147C	SMD3	U2 snRNP complex
YOR159C	SME1	U2 snRNP complex
YFL017W-A	SMX2	U2 snRNP complex
YPR182W	SMX3	U2 snRNP complex
Q0045	COX1	Cytochrome c oxidase (complex IV)	7851399	Co-purification	GO:0005751	mitochondrial respiratory chain complex IV	0.916666666666667
YLR038C	COX12	Cytochrome c oxidase (complex IV)
YGL191W	COX13	Cytochrome c oxidase (complex IV)
Q0250	COX2	Cytochrome c oxidase (complex IV)
Q0275	COX3	Cytochrome c oxidase (complex IV)
YGL187C	COX4	Cytochrome c oxidase (complex IV)
YNL052W	COX5A	Cytochrome c oxidase (complex IV)
YHR051W	COX6	Cytochrome c oxidase (complex IV)
YMR256C	COX7	Cytochrome c oxidase (complex IV)
YLR395C	COX8	Cytochrome c oxidase (complex IV)
YDL067C	COX9	Cytochrome c oxidase (complex IV)
YJR005W	APL1	AP-2 adaptor complex	10564262	Affinity Capture-Western	GO:0030122	AP-2 adaptor complex	1
YBL037W	APL3	AP-2 adaptor complex
YOL062C	APM4	AP-2 adaptor complex
YJR058C	APS2	AP-2 adaptor complex
YLR418C	CDC73	Cdc73p/Paf1p complex	11884586	"Affinity Capture-Western,Affinity Capture-MS"	GO:0016593	Cdc73/Paf1 complex	1
YOL145C	CTR9	Cdc73p/Paf1p complex
YDR138W	HPR1	Cdc73p/Paf1p complex
YOR123C	LEO1	Cdc73p/Paf1p complex
YBR279W	PAF1	Cdc73p/Paf1p complex
YGL244W	RTF1	Cdc73p/Paf1p complex
YAL021C	CCR4	Cdc73p/Paf1p complex
YOL078W	AVO1	TORC 2 complex	15689497	"Affinity Capture-Western,Reconstituted Complex"	GO:0031932	TORC2 complex	1
YMR068W	AVO2	TORC 2 complex
YJL058C	BIT61	TORC 2 complex
YNL006W	LST8	TORC 2 complex
YIL105C	SLM1	TORC 2 complex
YNL047C	SLM2	TORC 2 complex
YKL203C	TOR2	TORC 2 complex
YER093C	TSC11	TORC 2 complex
YDR019C	GCV1	glycine cleavage complex	10187845	Traceable author statement	GO:0005960	glycine cleavage complex	1
YMR189W	GCV2	glycine cleavage complex
YAL044C	GCV3	glycine cleavage complex
YFL018C	LPD1	glycine cleavage complex
YPL075W	GCR1	GCR complex	1508187	Two-hybrid	-	-	0
YNL199C	GCR2	GCR complex
YIR010W	DSN1	MIND complex	14633972	"Affinity Capture-Western,Co-purification"	GO:0000818	nuclear MIS12/MIND type complex	1
YAL034W-A	MTW1	MIND complex
YJR112W	NNF1	MIND complex
YPL233W	NSL1	MIND complex
YAR007C	RFA1	DNA replication factor A complex	2554144	Co-purification	GO:0005662	DNA replication factor A complex	1
YNL312W	RFA2	DNA replication factor A complex
YJL173C	RFA3	DNA replication factor A complex
YOR232W	MGE1	PAM complex	16107694	Affinity Capture-MS	GO:0001405	presequence translocase-associated import motor	0.857142857142857
YJL104W	PAM16	PAM complex
YKR065C	PAM17	PAM complex
YLR008C	PAM18	PAM complex
YJR045C	SSC1	PAM complex
YIL022W	TIM44	PAM complex
YKL052C	ASK1	DASH complex	15640796	Co-purification	GO:0042729	DASH complex	1
YDR016C	DAD1	DASH complex
YKR083C	DAD2	DASH complex
YBR233W-A	DAD3	DASH complex
YDR320C-A	DAD4	DASH complex
YGR113W	DAM1	DASH complex
YGL061C	DUO1	DASH complex
YKL138C-A	HSK3	DASH complex
YDR201W	SPC19	DASH complex
YKR037C	SPC34	DASH complex
YDR255C	RMD5	FBP degradation complex	16554755	Affinity Capture-MS	-	-	0
YCL039W	GID7	FBP degradation complex
YMR135C	GID8	FBP degradation complex
YBR105C	VID24	FBP degradation complex
YIL017C	VID28	FBP degradation complex
YGL227W	VID30	FBP degradation complex
YIL097W	FYV10	FBP degradation complex
YDL176W	YDL176W	FBP degradation complex
YDR076W	RAD55	other DNA repair complexes	9159392	Reconstituted Complex	GO:0033062	Rhp55-Rhp57 complex	1
YDR004W	RAD57	other DNA repair complexes
YDR028C	REG1	Reg1p/Glc7p complex	8846786	"Two-hybrid,Affinity Capture-Western"	GO:0000164	protein phosphatase type 1 complex	0.285714285714286
YER133W	GLC7	Reg1p/Glc7p complex
YOR303W	CPA1	carbamoyl-phosphate synthase complex	8626695	Traceable author statement	GO:0005951	carbamoyl-phosphate synthase complex	1
YJR109C	CPA2	carbamoyl-phosphate synthase complex
YML111W	BUL2	Rsp5p/Bul2 ubiquitin ligase complex	9931424	"Two-hybrid,Affinity Capture-Western"	GO:0000151	ubiquitin ligase complex	0.2
YER125W	RSP5	Rsp5p/Bul2 ubiquitin ligase complex
Q0120	BI4	Bi4p/Nam2p complex	11142386	Two-hybrid	-	-	0
YLR382C	NAM2	Bi4p/Nam2p complex
YMR287C	DSS1	degradosome	12426313	Affinity Capture-MS	-	-	0
YPL029W	SUV3	degradosome
YGR262C	BUD32	EKC/KEOPS protein complex	16564010	"Affinity Capture-Western,Affinity Capture-MS"	GO:0000408	EKC/KEOPS protein complex	1
YML036W	CGI121	EKC/KEOPS protein complex
YJL184W	GON7	EKC/KEOPS protein complex
YKR038C	KAE1	EKC/KEOPS protein complex
YKR095W-A	PCC1	EKC/KEOPS protein complex
YLR075W	RPL10	cytoplasmic ribosomal large subunit	11983894	Affinity Capture-MS	GO:0022625	cytosolic large ribosomal subunit	0.941860465116279
YPR102C	RPL11A	cytoplasmic ribosomal large subunit
YGR085C	RPL11B	cytoplasmic ribosomal large subunit
YEL054C	RPL12A	cytoplasmic ribosomal large subunit
YDR418W	RPL12B	cytoplasmic ribosomal large subunit
YDL082W	RPL13A	cytoplasmic ribosomal large subunit
YMR142C	RPL13B	cytoplasmic ribosomal large subunit
YKL006W	RPL14A	cytoplasmic ribosomal large subunit
YHL001W	RPL14B	cytoplasmic ribosomal large subunit
YLR029C	RPL15A	cytoplasmic ribosomal large subunit
YMR121C	RPL15B	cytoplasmic ribosomal large subunit
YIL133C	RPL16A	cytoplasmic ribosomal large subunit
YNL069C	RPL16B	cytoplasmic ribosomal large subunit
YKL180W	RPL17A	cytoplasmic ribosomal large subunit
YJL177W	RPL17B	cytoplasmic ribosomal large subunit
YOL120C	RPL18A	cytoplasmic ribosomal large subunit
YNL301C	RPL18B	cytoplasmic ribosomal large subunit
YBR084C-A	RPL19A	cytoplasmic ribosomal large subunit
YBL027W	RPL19B	cytoplasmic ribosomal large subunit
YPL220W	RPL1A	cytoplasmic ribosomal large subunit
YGL135W	RPL1B	cytoplasmic ribosomal large subunit
YMR242C	RPL20A	cytoplasmic ribosomal large subunit
YOR312C	RPL20B	cytoplasmic ribosomal large subunit
YBR191W	RPL21A	cytoplasmic ribosomal large subunit
YPL079W	RPL21B	cytoplasmic ribosomal large subunit
YLR061W	RPL22A	cytoplasmic ribosomal large subunit
YFL034C-A	RPL22B	cytoplasmic ribosomal large subunit
YBL087C	RPL23A	cytoplasmic ribosomal large subunit
YER117W	RPL23B	cytoplasmic ribosomal large subunit
YGL031C	RPL24A	cytoplasmic ribosomal large subunit
YGR148C	RPL24B	cytoplasmic ribosomal large subunit
YOL127W	RPL25	cytoplasmic ribosomal large subunit
YLR344W	RPL26A	cytoplasmic ribosomal large subunit
YGR034W	RPL26B	cytoplasmic ribosomal large subunit
YHR010W	RPL27A	cytoplasmic ribosomal large subunit
YDR471W	RPL27B	cytoplasmic ribosomal large subunit
YGL103W	RPL28	cytoplasmic ribosomal large subunit
YFR032C-A	RPL29	cytoplasmic ribosomal large subunit
YFR031C-A	RPL2A	cytoplasmic ribosomal large subunit
YIL018W	RPL2B	cytoplasmic ribosomal large subunit
YOR063W	RPL3	cytoplasmic ribosomal large subunit
YGL030W	RPL30	cytoplasmic ribosomal large subunit
YDL075W	RPL31A	cytoplasmic ribosomal large subunit
YLR406C	RPL31B	cytoplasmic ribosomal large subunit
YBL092W	RPL32	cytoplasmic ribosomal large subunit
YPL143W	RPL33A	cytoplasmic ribosomal large subunit
YOR234C	RPL33B	cytoplasmic ribosomal large subunit
YER056C-A	RPL34A	cytoplasmic ribosomal large subunit
YIL052C	RPL34B	cytoplasmic ribosomal large subunit
YDL191W	RPL35A	cytoplasmic ribosomal large subunit
YDL136W	RPL35B	cytoplasmic ribosomal large subunit
YMR194W	RPL36A	cytoplasmic ribosomal large subunit
YPL249C-A	RPL36B	cytoplasmic ribosomal large subunit
YLR185W	RPL37A	cytoplasmic ribosomal large subunit
YDR500C	RPL37B	cytoplasmic ribosomal large subunit
YLR325C	RPL38	cytoplasmic ribosomal large subunit
YJL189W	RPL39	cytoplasmic ribosomal large subunit
YIL148W	RPL40A	cytoplasmic ribosomal large subunit
YKR094C	RPL40B	cytoplasmic ribosomal large subunit
YDL184C	RPL41A	cytoplasmic ribosomal large subunit
YDL133C-A	RPL41B	cytoplasmic ribosomal large subunit
YNL162W	RPL42A	cytoplasmic ribosomal large subunit
YHR141C	RPL42B	cytoplasmic ribosomal large subunit
YPR043W	RPL43A	cytoplasmic ribosomal large subunit
YJR094W-A	RPL43B	cytoplasmic ribosomal large subunit
YBR031W	RPL4A	cytoplasmic ribosomal large subunit
YDR012W	RPL4B	cytoplasmic ribosomal large subunit
YPL131W	RPL5	cytoplasmic ribosomal large subunit
YML073C	RPL6A	cytoplasmic ribosomal large subunit
YLR448W	RPL6B	cytoplasmic ribosomal large subunit
YGL076C	RPL7A	cytoplasmic ribosomal large subunit
YPL198W	RPL7B	cytoplasmic ribosomal large subunit
YHL033C	RPL8A	cytoplasmic ribosomal large subunit
YLL045C	RPL8B	cytoplasmic ribosomal large subunit
YGL147C	RPL9A	cytoplasmic ribosomal large subunit
YNL067W	RPL9B	cytoplasmic ribosomal large subunit
YLR340W	RPP0	cytoplasmic ribosomal large subunit
YDL081C	RPP1A	cytoplasmic ribosomal large subunit
YDL130W	RPP1B	cytoplasmic ribosomal large subunit
YOL039W	RPP2A	cytoplasmic ribosomal large subunit
YDR382W	RPP2B	cytoplasmic ribosomal large subunit
YDL207W	GLE1	Nup82 nuclear pore subcomplex	9736720	Reconstituted Complex	GO:0005643	nuclear pore	0.0612244897959184
YIL115C	NUP159	Nup82 nuclear pore subcomplex
YJL061W	NUP82	Nup82 nuclear pore subcomplex
YER027C	GAL83	Snf1p/Snf4p/Gal83p complex	12393914	Affinity Capture-Western	GO:0031588	AMP-activated protein kinase complex	0.6
YDR477W	SNF1	Snf1p/Snf4p/Gal83p complex
YGL115W	SNF4	Snf1p/Snf4p/Gal83p complex
YBR112C	CYC8	Tup1p/Ssn6p complex	8943325	"Affinity Capture-Western,Reconstituted Complex"	GO:0017053	transcriptional repressor complex	1
YCR084C	TUP1	Tup1p/Ssn6p complex
YGR003W	CUL3	Cul3p-RING ubiquitin ligase complex	16675952	"Affinity Capture-Western,Co-purification"	GO:0031463	Cul3-RING ubiquitin ligase complex	1
YNL230C	ELA1	Cul3p-RING ubiquitin ligase complex
YPL046C	ELC1	Cul3p-RING ubiquitin ligase complex
YBR114W	RAD16	Cul3p-RING ubiquitin ligase complex
YJR052W	RAD7	Cul3p-RING ubiquitin ligase complex
YPR025C	CCL1	transcription factor TFIIH complex	15220919	"Affinity Capture-Western,Affinity Capture-MS"	GO:0000442	SSL2-core TFIIH complex portion of NEF3 complex	0.6
YDL108W	KIN28	transcription factor TFIIH complex
YDR460W	TFB3	transcription factor TFIIH complex
YER171W	RAD3	transcription factor TFIIH complex
YLR005W	SSL1	transcription factor TFIIH complex
YIL143C	SSL2	transcription factor TFIIH complex
YDR311W	TFB1	transcription factor TFIIH complex
YPL122C	TFB2	transcription factor TFIIH complex
YPR056W	TFB4	transcription factor TFIIH complex
YDR079C-A	TFB5	transcription factor TFIIH complex
YDR517W	GRH1	Grh1p/Bug1p complex	17261844	Affinity Capture-Western	-	-	0
YDL099W	BUG1	Grh1p/Bug1p complex
YOR206W	NOC2	Noc2p/Noc3p complex	11371346	Affinity Capture-Western	GO:0030691	Noc2p-Noc3p complex	1
YLR002C	NOC3	Noc2p/Noc3p complex
YBR217W	ATG12	Apg12p/Apg5p/Apg16 multimeric complex	11897782	Co-purification	-	-	0
YMR159C	ATG16	Apg12p/Apg5p/Apg16 multimeric complex
YPL149W	ATG5	Apg12p/Apg5p/Apg16 multimeric complex
YMR296C	LCB1	serine C-palmitoyltransferase complex	8058731	Biochemical Activity	GO:0017059	serine C-palmitoyltransferase complex	1
YDR062W	LCB2	serine C-palmitoyltransferase complex
YER148W	SPT15	transcription factor TFIID complex	15448131	Affinity Capture-MS	GO:0005669	transcription factor TFIID complex	1
YGR274C	TAF1	transcription factor TFIID complex
YDR167W	TAF10	transcription factor TFIID complex
YML015C	TAF11	transcription factor TFIID complex
YDR145W	TAF12	transcription factor TFIID complex
YML098W	TAF13	transcription factor TFIID complex
YPL129W	TAF14	transcription factor TFIID complex
YCR042C	TAF2	transcription factor TFIID complex
YPL011C	TAF3	transcription factor TFIID complex
YMR005W	TAF4	transcription factor TFIID complex
YBR198C	TAF5	transcription factor TFIID complex
YGL112C	TAF6	transcription factor TFIID complex
YMR227C	TAF7	transcription factor TFIID complex
YML114C	TAF8	transcription factor TFIID complex
YMR236W	TAF9	transcription factor TFIID complex
YOL069W	NUF2	Ndc80p complex	11266451	Affinity Capture-Western	GO:0031262	Ndc80 complex	1
YMR117C	SPC24	Ndc80p complex
YER018C	SPC25	Ndc80p complex
YIL144W	TID3	Ndc80p complex
YKL189W	HYM1	Hym1p/Kic1p/Sog2p complex	12972564	"Two-hybrid,Affinity Capture-Western"	-	-	0
YHR102W	KIC1	Hym1p/Kic1p/Sog2p complex
YOR353C	SOG2	Hym1p/Kic1p/Sog2p complex
YDR060W	MAK21	Noc1p/Noc2p complex	11371346	Affinity Capture-Western	GO:0030690	Noc1p-Noc2p complex	1
YOR206W	NOC2	Noc1p/Noc2p complex
YDL201W	TRM8	tRNA Methyltransferase Complex	12403464	Co-purification	-	-	0
YDR165W	TRM82	tRNA Methyltransferase Complex
YEL055C	POL5	UTP A complex	14759368	Affinity Capture-MS	GO:0032040	small-subunit processome	0.122448979591837
YPL126W	NAN1	UTP A complex
YDR324C	UTP4	UTP A complex
YGR128C	UTP8	UTP A complex
YHR196W	UTP9	UTP A complex
YJL109C	UTP10	UTP A complex
YMR093W	UTP15	UTP A complex
YOR346W	REV1	Polzeta-Rev1p complex	17030609	Affinity Capture-Western	GO:0016035	zeta DNA polymerase complex	0.666666666666667
YPL167C	REV3	Polzeta-Rev1p complex
YIL139C	REV7	Polzeta-Rev1p complex
YIL026C	IRR1	nuclear cohesin complex	9990856	Affinity Capture-Western	GO:0000798	nuclear cohesin complex	1
YDL003W	MCD1	nuclear cohesin complex
YPR007C	REC8	nuclear cohesin complex
YFL008W	SMC1	nuclear cohesin complex
YJL074C	SMC3	nuclear cohesin complex
YAL041W	CDC24	Cdc24p/Far1p/Gbetagamma protein complex	10087263	"Two-hybrid,Affinity Capture-Western,Reconstituted Complex"	GO:0005834	heterotrimeric G-protein complex	0.4
YJL157C	FAR1	Cdc24p/Far1p/Gbetagamma protein complex
YJR086W	STE18	Cdc24p/Far1p/Gbetagamma protein complex
YOR212W	STE4	Cdc24p/Far1p/Gbetagamma protein complex
YFL034C-B	MOB2	Mob2p/Cbk1p complex	12196508	Affinity Capture-Western	-	-	0
YNL161W	CBK1	Mob2p/Cbk1p complex
YBR036C	CSG2	Csh1p/Csg2p complex	12954640	Affinity Capture-Western	-	-	0
YBR161W	CSH1	Csh1p/Csg2p complex
YMR167W	MLH1	Mlh1p/Pms1p complex	10570173	"Two-hybrid,Affinity Capture-Western"	GO:0032389	MutLalpha complex	1
YNL082W	PMS1	Mlh1p/Pms1p complex
YNL124W	NAF1	Shq1p/Naf1p complex	12228251	Reconstituted Complex	-	-	0
YIL104C	SHQ1	Shq1p/Naf1p complex
YJR086W	STE18	heterodimeric G-protein complex	8995254	Affinity Capture-Western	GO:0005834	heterotrimeric G-protein complex	0.666666666666667
YOR212W	STE4	heterodimeric G-protein complex
YGL105W	ARC1	methionyl glutamyl tRNA synthetase complex	9659920	Affinity Capture-Western	GO:0017102	methionyl glutamyl tRNA synthetase complex	1
YGL245W	GUS1	methionyl glutamyl tRNA synthetase complex
YGR264C	MES1	methionyl glutamyl tRNA synthetase complex
YIR022W	SEC11	signal peptidase complex	1846444	Co-purification	GO:0005787	signal peptidase complex	1
YJR010C-A	SPC1	signal peptidase complex
YML055W	SPC2	signal peptidase complex
YLR066W	SPC3	signal peptidase complex
YNL244C	SUI1	eIF1/eIF1A/40S complex	12860115	FRET	GO:0043614	multi-eIF complex	0.111111111111111
YMR260C	TIF11	eIF1/eIF1A/40S complex
YBR160W	CDC28	Cdc28p/Cln1p complex	8319908	Traceable author statement	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.0666666666666667
YMR199W	CLN1	Cdc28p/Cln1p complex
YNL232W	CSL4	Nuclear exosome complex	10465791	Affinity Capture-MS	GO:0000176	nuclear exosome (RNase complex)	1
YOL021C	DIS3	Nuclear exosome complex
YHR081W	LRP1	Nuclear exosome complex
YGR158C	MTR3	Nuclear exosome complex
YHR069C	RRP4	Nuclear exosome complex
YOL142W	RRP40	Nuclear exosome complex
YDL111C	RRP42	Nuclear exosome complex
YCR035C	RRP43	Nuclear exosome complex
YDR280W	RRP45	Nuclear exosome complex
YGR095C	RRP46	Nuclear exosome complex
YOR001W	RRP6	Nuclear exosome complex
YGR195W	SKI6	Nuclear exosome complex
YGL086W	MAD1	Mad1p/Mad2p complex	10436016	"Two-hybrid,Affinity Capture-Western,Co-purification"	GO:0033597	mitotic checkpoint complex	0.2
YJL030W	MAD2	Mad1p/Mad2p complex
YMR080C	NAM7	Nonsense-mediated mRNA decay pathway complex	9032286	Two-hybrid	GO:0005844	polysome	0.214285714285714
YHR077C	NMD2	Nonsense-mediated mRNA decay pathway complex
YGR072W	UPF3	Nonsense-mediated mRNA decay pathway complex
YNL138W-A	YSF3	SF3b complex	15565172	Affinity Capture-MS	GO:0005686	snRNP U2	0.285714285714286
YMR240C	CUS1	SF3b complex
YMR288W	HSH155	SF3b complex
YOR319W	HSH49	SF3b complex
YPR094W	RDS3	SF3b complex
YML049C	RSE1	SF3b complex
YJL209W	CBP1	Cbp1p/Pet309p complex	15047869	Affinity Capture-MS	-	-	0
YLR067C	PET309	Cbp1p/Pet309p complex
YFL039C	ACT1	NuA4 histone acetyltransferase complex	15353583	Affinity Capture-MS	GO:0035267	NuA4 histone acetyltransferase complex	1
YJL081C	ARP4	NuA4 histone acetyltransferase complex
YPR023C	EAF3	NuA4 histone acetyltransferase complex
YEL018W	EAF5	NuA4 histone acetyltransferase complex
YJR082C	EAF6	NuA4 histone acetyltransferase complex
YNL136W	EAF7	NuA4 histone acetyltransferase complex
YFL024C	EPL1	NuA4 histone acetyltransferase complex
YOR244W	ESA1	NuA4 histone acetyltransferase complex
YGR002C	SWC4	NuA4 histone acetyltransferase complex
YHR099W	TRA1	NuA4 histone acetyltransferase complex
YDR359C	EAF1	NuA4 histone acetyltransferase complex
YNL107W	YAF9	NuA4 histone acetyltransferase complex
YHR090C	YNG2	NuA4 histone acetyltransferase complex
YIL035C	CKA1	protein kinase CK2 complex	3468112	Affinity Capture-Western	GO:0005956	protein kinase CK2 complex	1
YOR061W	CKA2	protein kinase CK2 complex
YGL019W	CKB1	protein kinase CK2 complex
YOR039W	CKB2	protein kinase CK2 complex
YMR127C	SAS2	SAS Complex	15659401	Affinity Capture-MS	-	-	0
YDR181C	SAS4	SAS Complex
YOR213C	SAS5	SAS Complex
YJR089W	BIR1	Sli15p/Bir1p complex	16381814	Two-hybrid	GO:0000778	condensed nuclear chromosome kinetochore	0.0303030303030303
YBR156C	SLI15	Sli15p/Bir1p complex
YDL145C	COP1	COPI	1461285	Co-purification	GO:0030126	COPI vesicle coat	1
YER122C	GLO3	COPI
YFR051C	RET2	COPI
YPL010W	RET3	COPI
YNL287W	SEC21	COPI
YDR238C	SEC26	COPI
YGL137W	SEC27	COPI
YIL076W	SEC28	COPI
YGL194C	HOS2	Set3p complex	15643056	Affinity Capture-Western	GO:0000118	histone deacetylase complex	0.388888888888889
YIL112W	HOS4	Set3p complex
YDR155C	CPR1	Set3p complex
YOL068C	HST1	Set3p complex
YKR029C	SET3	Set3p complex
YBR103W	SIF2	Set3p complex
YCR033W	SNT1	Set3p complex
YPL022W	RAD1	nucleotide-excision repair factor 1 complex	8621533	"Affinity Capture-Western,Co-purification"	GO:0000110	nucleotide-excision repair factor 1 complex	1
YML095C	RAD10	nucleotide-excision repair factor 1 complex
YMR201C	RAD14	nucleotide-excision repair factor 1 complex
YMR048W	CSM3	Tof1p/Mrc1p/Csm3p complex	15755447	Affinity Capture-MS	-	-	0
YCL061C	MRC1	Tof1p/Mrc1p/Csm3p complex
YNL273W	TOF1	Tof1p/Mrc1p/Csm3p complex
YFL039C	ACT1	Swr1p complex	14690608	"Affinity Capture-Western,Affinity Capture-MS"	GO:0000812	SWR1 complex	1
YJL081C	ARP4	Swr1p complex
YLR085C	ARP6	Swr1p complex
YDR190C	RVB1	Swr1p complex
YPL235W	RVB2	Swr1p complex
YAL011W	SWC3	Swr1p complex
YGR002C	SWC4	Swr1p complex
YBR231C	SWC5	Swr1p complex
YLR385C	SWC7	Swr1p complex
YDR334W	SWR1	Swr1p complex
YML041C	VPS71	Swr1p complex
YDR485C	VPS72	Swr1p complex
YNL107W	YAF9	Swr1p complex
YNL172W	APC1	anaphase-promoting complex	9469814	Affinity Capture-MS	GO:0005680	anaphase-promoting complex	0.9375
YDL008W	APC11	anaphase-promoting complex
YLR127C	APC2	anaphase-promoting complex
YDR118W	APC4	anaphase-promoting complex
YOR249C	APC5	anaphase-promoting complex
YLR102C	APC9	anaphase-promoting complex
YKL022C	CDC16	anaphase-promoting complex
YGL116W	CDC20	anaphase-promoting complex
YHR166C	CDC23	anaphase-promoting complex
YFR036W	CDC26	anaphase-promoting complex
YBL084C	CDC27	anaphase-promoting complex
YGL003C	CDH1	anaphase-promoting complex
YGL240W	DOC1	anaphase-promoting complex
YIR025W	MND2	anaphase-promoting complex
YDR260C	SWM1	anaphase-promoting complex
YKL148C	SDH1	Succinate dehydrogenase complex (complex II)	14672929	Biochemical Activity	GO:0005749	mitochondrial respiratory chain complex II	1
YLL041C	SDH2	Succinate dehydrogenase complex (complex II)
YKL141W	SDH3	Succinate dehydrogenase complex (complex II)
YDR178W	SDH4	Succinate dehydrogenase complex (complex II)
YOL001W	PHO80	Pho85p/Pho80p complex	9032248	Two-hybrid	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.142857142857143
YPL031C	PHO85	Pho85p/Pho80p complex
YHR005C	GPA1	heterotrimeric G-protein complex	8417317	Biochemical Activity	GO:0005834	heterotrimeric G-protein complex	1
YJR086W	STE18	heterotrimeric G-protein complex
YOR212W	STE4	heterotrimeric G-protein complex
YIL153W	RRD1	Tap42p/Sit4p/Rrd1p complex	15689491	Affinity Capture-Western	-	-	0
YDL047W	SIT4	Tap42p/Sit4p/Rrd1p complex
YMR028W	TAP42	Tap42p/Sit4p/Rrd1p complex
YGL206C	CHC1	Clathrin	9171338	Affinity Capture-Western	GO:0030125	clathrin vesicle coat	0.5
YGR167W	CLC1	Clathrin
YLR329W	REC102	meiotic recombination initiation complex	12897161	Affinity Capture-Western	-	-	0
YHR157W	REC104	meiotic recombination initiation complex
YHL022C	SPO11	meiotic recombination initiation complex
YAR014C	BUD14	Bud14p/Glc7p complex	16107882	"Two-hybrid,Affinity Capture-Western"	GO:0000164	protein phosphatase type 1 complex	0.125
YER133W	GLC7	Bud14p/Glc7p complex
YGL134W	PCL10	Pho85p/Pcl10p complex	10490639	"Affinity Capture-Western,Reconstituted Complex"	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.142857142857143
YPL031C	PHO85	Pho85p/Pcl10p complex
YKL028W	TFA1	transcription factor TFIIE complex	1429681	Co-purification	GO:0005673	transcription factor TFIIE complex	1
YKR062W	TFA2	transcription factor TFIIE complex
YEL036C	ANP1	"alpha-1,6-mannosyltransferase complex(Anp1p/Mnn9p)"	9430634	Affinity Capture-Western	GO:0000136	alpha-1,6-mannosyltransferase complex	0.833333333333333
YJR075W	HOC1	"alpha-1,6-mannosyltransferase complex(Anp1p/Mnn9p)"
YDR245W	MNN10	"alpha-1,6-mannosyltransferase complex(Anp1p/Mnn9p)"
YJL183W	MNN11	"alpha-1,6-mannosyltransferase complex(Anp1p/Mnn9p)"
YPL050C	MNN9	"alpha-1,6-mannosyltransferase complex(Anp1p/Mnn9p)"
YDL090C	RAM1	protein farnesyltransferase complex	8406041	Affinity Capture-Western	GO:0005965	protein farnesyltransferase complex	1
YKL019W	RAM2	protein farnesyltransferase complex
YJL041W	NSP1	Nsp1p complex	7688296	Co-purification	GO:0005643	nuclear pore	0.0816326530612245
YFR002W	NIC96	Nsp1p complex
YGL172W	NUP49	Nsp1p complex
YGR119C	NUP57	Nsp1p complex
YPR023C	EAF3	Rpd3S complex	16286007	Affinity Capture-MS	GO:0000509	Rpd3S complex	1
YMR075W	RCO1	Rpd3S complex
YNL330C	RPD3	Rpd3S complex
YOL004W	SIN3	Rpd3S complex
YPL139C	UME1	Rpd3S complex
YPL167C	REV3	zeta DNA polymerase complex	8658138	Affinity Capture-Western	GO:0016035	zeta DNA polymerase complex	1
YIL139C	REV7	zeta DNA polymerase complex
YLR274W	MCM5	Mcm2-7 complex	12480933	Co-purification	GO:0042555	MCM complex	1
YBR202W	MCM7	Mcm2-7 complex
YPR019W	MCM4	Mcm2-7 complex
YBL023C	MCM2	Mcm2-7 complex
YEL032W	MCM3	Mcm2-7 complex
YGL201C	MCM6	Mcm2-7 complex
YML121W	GTR1	GSE Complex	16732272	"Reconstituted Complex,Affinity Capture-MS,Co-purification"	GO:0030688	preribosome, small subunit precursor	0.111111111111111
YGR163W	GTR2	GSE Complex
YKL143W	LTV1	GSE Complex
YKR007W	MEH1	GSE Complex
YBR077C	SLM4	GSE Complex
YBR160W	CDC28	Cdc28p/Clb3p complex	8319908	Traceable author statement	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.0666666666666667
YDL155W	CLB3	Cdc28p/Clb3p complex
YNL232W	CSL4	Cytoplasmic exosome complex	10465791	Affinity Capture-MS	GO:0000177	cytoplasmic exosome (RNase complex)	1
YOL021C	DIS3	Cytoplasmic exosome complex
YGR158C	MTR3	Cytoplasmic exosome complex
YHR069C	RRP4	Cytoplasmic exosome complex
YOL142W	RRP40	Cytoplasmic exosome complex
YDL111C	RRP42	Cytoplasmic exosome complex
YCR035C	RRP43	Cytoplasmic exosome complex
YDR280W	RRP45	Cytoplasmic exosome complex
YGR095C	RRP46	Cytoplasmic exosome complex
YGR195W	SKI6	Cytoplasmic exosome complex
YPR034W	ARP7	RSC complex	8980231	Co-purification	GO:0016586	RSC complex	1
YMR033W	ARP9	RSC complex
YCR020W-B	HTL1	RSC complex
YBL006C	LDB7	RSC complex
YMR091C	NPL6	RSC complex
YGR056W	RSC1	RSC complex
YLR357W	RSC2	RSC complex
YDR303C	RSC3	RSC complex
YHR056C	RSC30	RSC complex
YKR008W	RSC4	RSC complex
YLR033W	RSC58	RSC complex
YCR052W	RSC6	RSC complex
YFR037C	RSC8	RSC complex
YML127W	RSC9	RSC complex
YGR275W	RTT102	RSC complex
YLR321C	SFH1	RSC complex
YIL126W	STH1	RSC complex
YCL031C	RRP7	UTP C complex	14759368	Affinity Capture-MS	GO:0005956	protein kinase CK2 complex	0.666666666666667
YGR090W	UTP22	UTP C complex
YIL035C	CKA1	UTP C complex
YOR061W	CKA2	UTP C complex
YGL019W	CKB1	UTP C complex
YOR039W	CKB2	UTP C complex
YFR044C	DUG1	GSH degradosomal complex	17179087	"Affinity Capture-Western,Two-hybrid"	-	-	0
YBR281C	DUG2	GSH degradosomal complex
YNL191W	DUG3	GSH degradosomal complex
YGL246C	RAI1	RNA Degradation Complex	15565157	Affinity Capture-MS	-	-	0
YOR048C	RAT1	RNA Degradation Complex
YDR289C	RTT103	RNA Degradation Complex
YDL126C	CDC48	Cdc48p complex	11598205	Affinity Capture-Western	GO:0034098	Cdc48p-Npl4p-Ufd1p AAA ATPase complex	1
YGR048W	UFD1	Cdc48p complex
YBR170C	NPL4	Cdc48p complex
YBR160W	CDC28	Cdc28p/Cln3p complex	1316273	Affinity Capture-Western	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.0666666666666667
YAL040C	CLN3	Cdc28p/Cln3p complex
YPR180W	AOS1	Uba2p/Aos1p complex	9312010	Reconstituted Complex	GO:0031510	SUMO activating enzyme complex	1
YDR390C	UBA2	Uba2p/Aos1p complex
YGL130W	CEG1	mRNA guanylyl transferase (capping complex)	3029058	Affinity Capture-Western	GO:0031533	mRNA capping enzyme complex	1
YPL228W	CET1	mRNA guanylyl transferase (capping complex)
YDL134C	PPH21	protein phosphatase type 2A complex (Rts1p)	17550305	Affinity Capture-Western	GO:0000159	protein phosphatase type 2A complex	0.5
YOR014W	RTS1	protein phosphatase type 2A complex (Rts1p)
YAL016W	TPD3	protein phosphatase type 2A complex (Rts1p)
YEL037C	RAD23	nucleotide-excision repair factor 2 complex	7768886	Co-purification	GO:0000111	nucleotide-excision repair factor 2 complex	1
YER162C	RAD4	nucleotide-excision repair factor 2 complex
Q0045	COX1	Cox14p/Cox1p/Mss51p complex	15306853	Affinity Capture-Western	GO:0005751	mitochondrial respiratory chain complex IV	0.0714285714285714
YML129C	COX14	Cox14p/Cox1p/Mss51p complex
YLR203C	MSS51	Cox14p/Cox1p/Mss51p complex
YLR148W	PEP3	CORVET complex	17488625	"Affinity Capture-Western,Affinity Capture-MS"	GO:0033263	CORVET complex	1
YMR231W	PEP5	CORVET complex
YDR495C	VPS3	CORVET complex
YPL045W	VPS16	CORVET complex
YLR396C	VPS33	CORVET complex
YAL002W	VPS8	CORVET complex
YDL113C	ATG20	Atg20p/Snx4p/Snx41p complex	12554655	Affinity Capture-Western	-	-	0
YJL036W	SNX4	Atg20p/Snx4p/Snx41p complex
YDR425W	SNX41	Atg20p/Snx4p/Snx41p complex
YER025W	GCD11	multi-eIF complex	11018020	Affinity Capture-Western	GO:0043614	multi-eIF complex	1
YMR309C	NIP1	multi-eIF complex
YOR361C	PRT1	multi-eIF complex
YNL244C	SUI1	multi-eIF complex
YJR007W	SUI2	multi-eIF complex
YPL237W	SUI3	multi-eIF complex
YMR146C	TIF34	multi-eIF complex
YPR041W	TIF5	multi-eIF complex
YNL153C	GIM3	prefoldin complex	9463374	Affinity Capture-Western	GO:0016272	prefoldin complex	1
YEL003W	GIM4	prefoldin complex
YML094W	GIM5	prefoldin complex
YGR078C	PAC10	prefoldin complex
YJL179W	PFD1	prefoldin complex
YLR200W	YKE2	prefoldin complex
YPR066W	UBA3	Ula1p/Uba3p complex	9545234	Reconstituted Complex	-	-	0
YPL003W	ULA1	Ula1p/Uba3p complex
YKL054C	DEF1	Def1p/Rad26p complex	11859374	Co-purification	-	-	0
YJR035W	RAD26	Def1p/Rad26p complex
YDR448W	ADA2	SAGA complex	15506919	Affinity Capture-MS	GO:0000124	SAGA complex	1
YER164W	CHD1	SAGA complex
YGR252W	GCN5	SAGA complex
YPL254W	HFI1	SAGA complex
YDR176W	NGG1	SAGA complex
YPL047W	SGF11	SAGA complex
YCL010C	SGF29	SAGA complex
YGL066W	SGF73	SAGA complex
YOL148C	SPT20	SAGA complex
YDR392W	SPT3	SAGA complex
YBR081C	SPT7	SAGA complex
YLR055C	SPT8	SAGA complex
YBR111W-A	SUS1	SAGA complex
YDR167W	TAF10	SAGA complex
YDR145W	TAF12	SAGA complex
YBR198C	TAF5	SAGA complex
YGL112C	TAF6	SAGA complex
YMR236W	TAF9	SAGA complex
YHR099W	TRA1	SAGA complex
YMR223W	UBP8	SAGA complex
YBR098W	MMS4	Holliday junction resolvase complex	17363897	Reconstituted Complex	GO:0048476	Holliday junction resolvase complex	1
YDR386W	MUS81	Holliday junction resolvase complex
YLL036C	PRP19	Prp19-associated complex	11842115	"Two-hybrid,Affinity Capture-Western"	GO:0005681	spliceosome	0.258064516129032
YMR213W	CEF1	Prp19-associated complex
YJR050W	ISY1	Prp19-associated complex
YLR117C	CLF1	Prp19-associated complex
YDR416W	SYF1	Prp19-associated complex
YGR129W	SYF2	Prp19-associated complex
YBR188C	NTC20	Prp19-associated complex
YPR101W	SNT309	Prp19-associated complex
YDL084W	SUB2	transcription export complex	11979277	Affinity Capture-Western	GO:0000346	transcription export complex	1
YNL253W	TEX1	transcription export complex
YDR381W	YRA1	transcription export complex
YDR009W	GAL3	GAL3p/GAL80p complex	11964151	Co-purification	-	-	0
YML051W	GAL80	GAL3p/GAL80p complex
YMR150C	IMP1	mitochondrial inner membrane peptidase complex	10821182	Affinity Capture-Western	GO:0042720	mitochondrial inner membrane peptidase complex	1
YMR035W	IMP2	mitochondrial inner membrane peptidase complex
YEL059C-A	SOM1	mitochondrial inner membrane peptidase complex
YEL027W	CUP5	"H+-transporting ATPase, Golgi"	11592965	"Co-localization, Biochemical Activity"	GO:0000221	vacuolar proton-transporting V-type ATPase, V1 domain	0.615384615384615
YHR026W	PPA1	"H+-transporting ATPase, Golgi"
YMR054W	STV1	"H+-transporting ATPase, Golgi"
YDL185W	TFP1	"H+-transporting ATPase, Golgi"
YPL234C	TFP3	"H+-transporting ATPase, Golgi"
YHR039C-A	VMA10	"H+-transporting ATPase, Golgi"
YPR036W	VMA13	"H+-transporting ATPase, Golgi"
YBR127C	VMA2	"H+-transporting ATPase, Golgi"
YOR332W	VMA4	"H+-transporting ATPase, Golgi"
YKL080W	VMA5	"H+-transporting ATPase, Golgi"
YLR447C	VMA6	"H+-transporting ATPase, Golgi"
YGR020C	VMA7	"H+-transporting ATPase, Golgi"
YEL051W	VMA8	"H+-transporting ATPase, Golgi"
YGR258C	RAD2	nucleotide-excision repair factor 3 complex	8855246	Affinity Capture-Western	GO:0000442	SSL2-core TFIIH complex portion of NEF3 complex	0.857142857142857
YER171W	RAD3	nucleotide-excision repair factor 3 complex
YLR005W	SSL1	nucleotide-excision repair factor 3 complex
YIL143C	SSL2	nucleotide-excision repair factor 3 complex
YDR311W	TFB1	nucleotide-excision repair factor 3 complex
YPL122C	TFB2	nucleotide-excision repair factor 3 complex
YPR056W	TFB4	nucleotide-excision repair factor 3 complex
YER111C	SWI4	SBF complex	2689885	Co-purification	-	-	0
YLR182W	SWI6	SBF complex
YDL192W	ARF1	Chs5p/Arf-1binding proteins (ChAPs)	16498409	"Affinity Capture-Western,Co-purification,Affinity Capture-MS"	GO:0034044	exomer complex	0.833333333333333
YMR237W	BCH1	Chs5p/Arf-1binding proteins (ChAPs)
YKR027W	BCH2	Chs5p/Arf-1binding proteins (ChAPs)
YOR299W	BUD7	Chs5p/Arf-1binding proteins (ChAPs)
YLR330W	CHS5	Chs5p/Arf-1binding proteins (ChAPs)
YJL099W	CHS6	Chs5p/Arf-1binding proteins (ChAPs)
YHR064C	SSZ1	Ribosome-associated complex (RAC)	11274393	Reconstituted Complex	GO:0005840	ribosome	0.04
YGR285C	ZUO1	Ribosome-associated complex (RAC)
YBR160W	CDC28	Cdc28p/Clb4p complex	8319908	Traceable author statement	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.0666666666666667
YLR210W	CLB4	Cdc28p/Clb4p complex
YPL055C	LGE1	Lge1p/Bre1p complex	17370254	Affinity Capture-MS	-	-	0
YDL074C	BRE1	Lge1p/Bre1p complex
YBL097W	BRN1	nuclear condensin complex	10811823	Affinity Capture-Western	GO:0000799	nuclear condensin complex	1
YFR031C	SMC2	nuclear condensin complex
YLR086W	SMC4	nuclear condensin complex
YDR325W	YCG1	nuclear condensin complex
YLR272C	YCS4	nuclear condensin complex
YLR238W	FAR10	Far3p/Far7p/Far8p/Far9p/Far10p/Far11p complex	12588993	Two-hybrid	-	-	0
YNL127W	FAR11	Far3p/Far7p/Far8p/Far9p/Far10p/Far11p complex
YMR052W	FAR3	Far3p/Far7p/Far8p/Far9p/Far10p/Far11p complex
YFR008W	FAR7	Far3p/Far7p/Far8p/Far9p/Far10p/Far11p complex
YMR029C	FAR8	Far3p/Far7p/Far8p/Far9p/Far10p/Far11p complex
YDR200C	VPS64	Far3p/Far7p/Far8p/Far9p/Far10p/Far11p complex
YOR317W	FAA1	Fatty Acid Import Complex	12601005	"Two-hybrid,Affinity Capture-Western"	-	-	0
YMR246W	FAA4	Fatty Acid Import Complex
YBR041W	FAT1	Fatty Acid Import Complex
YNL015W	PBI2	LMA1 complex	9015301	Co-purification	-	-	0
YLR043C	TRX1	LMA1 complex
YNL099C	OCA1	OCA complex	17370254	Affinity Capture-MS	-	-	0
YNL056W	OCA2	OCA complex
YNL032W	SIW14	OCA complex
YCR095C	YCR095C	OCA complex
YHL029C	YHL029C	OCA complex
YDR067C	YDR067C	OCA complex
YER048W-A	ISD11	Nfs1p/Isd11p complex	16341090	"Affinity Capture-Western,Co-purification,Affinity Capture-MS"	-	-	0
YCL017C	NFS1	Nfs1p/Isd11p complex
YMR167W	MLH1	Mlh1p/Mlh2p complex	10570173	"Two-hybrid,Affinity Capture-Western"	GO:0032390	MutLbeta complex	0.333333333333333
YLR035C	MLH2	Mlh1p/Mlh2p complex
YDR172W	SUP35	translation release factor complex	7556078	"Two-hybrid,Reconstituted Complex"	GO:0018444	translation release factor complex	1
YBR143C	SUP45	translation release factor complex
YNL071W	LAT1	mitochondrial pyruvate dehydrogenase complex	16643908	Affinity Capture-MS	GO:0005967	mitochondrial pyruvate dehydrogenase complex	0.571428571428571
YFL018C	LPD1	mitochondrial pyruvate dehydrogenase complex
YER178W	PDA1	mitochondrial pyruvate dehydrogenase complex
YBR221C	PDB1	mitochondrial pyruvate dehydrogenase complex
YGR193C	PDX1	mitochondrial pyruvate dehydrogenase complex
YIL042C	PKP1	mitochondrial pyruvate dehydrogenase complex
YOR090C	PTC5	mitochondrial pyruvate dehydrogenase complex
YPL255W	BBP1	Mps2p/Bbp1p complex	16436507	"Two-hybrid,Affinity Capture-Western,Co-localization"	-	-	0
YGL075C	MPS2	Mps2p/Bbp1p complex
YLR457C	NBP1	Mps2p/Bbp1p complex
YJL098W	SAP185	Sap185p/Sit4p complex	8649382	Affinity Capture-Western	-	-	0
YDL047W	SIT4	Sap185p/Sit4p complex
YDR448W	ADA2	SLIK (SAGA-like) complex	14563679	"Affinity Capture-Western,Co-purification"	GO:0046695	SLIK (SAGA-like) complex	1
YER164W	CHD1	SLIK (SAGA-like) complex
YGR252W	GCN5	SLIK (SAGA-like) complex
YPL254W	HFI1	SLIK (SAGA-like) complex
YDR176W	NGG1	SLIK (SAGA-like) complex
YGL252C	RTG2	SLIK (SAGA-like) complex
YGL066W	SGF73	SLIK (SAGA-like) complex
YOL148C	SPT20	SLIK (SAGA-like) complex
YDR392W	SPT3	SLIK (SAGA-like) complex
YBR081C	SPT7	SLIK (SAGA-like) complex
YDR167W	TAF10	SLIK (SAGA-like) complex
YDR145W	TAF12	SLIK (SAGA-like) complex
YBR198C	TAF5	SLIK (SAGA-like) complex
YGL112C	TAF6	SLIK (SAGA-like) complex
YMR236W	TAF9	SLIK (SAGA-like) complex
YHR099W	TRA1	SLIK (SAGA-like) complex
YMR223W	UBP8	SLIK (SAGA-like) complex
YOR250C	CLP1	mRNA cleavage factor complex (CFI)	11344258	Affinity Capture-Western	GO:0005849	mRNA cleavage factor complex	0.555555555555556
YOL123W	HRP1	mRNA cleavage factor complex (CFI)
YDR228C	PCF11	mRNA cleavage factor complex (CFI)
YMR061W	RNA14	mRNA cleavage factor complex (CFI)
YGL044C	RNA15	mRNA cleavage factor complex (CFI)
YBR160W	CDC28	Cdc28p/Clb2p complex	8319908	Traceable author statement	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.0666666666666667
YPR119W	CLB2	Cdc28p/Clb2p complex
YLR191W	PEX13	peroxin docking complex	12667447	Affinity Capture-Western	-	-	0
YGL153W	PEX14	peroxin docking complex
YNL214W	PEX17	peroxin docking complex
YOR142W	LSC1	Succinyl-CoA ligase	9874242	Biochemical Activity	-	-	0
YGR244C	LSC2	Succinyl-CoA ligase
YFL041W	FET5	Fth1p/Fet5p complex	10608875	Affinity Capture-Western	-	-	0
YBR207W	FTH1	Fth1p/Fet5p complex
YIR017C	MET28	Met4p/Met28p/Met32p complex	9799240	"Two-hybrid,Reconstituted Complex"	-	-	0
YDR253C	MET32	Met4p/Met28p/Met32p complex
YNL103W	MET4	Met4p/Met28p/Met32p complex
YPL169C	MEX67	Mtr2p/Mex67p complex	9774696	"Affinity Capture-Western,Reconstituted Complex"	GO:0042272	nuclear RNA export factor complex	1
YKL186C	MTR2	Mtr2p/Mex67p complex
YFR013W	IOC3	ISW1a complex	12482963	Affinity Capture-Western	GO:0016587	ISW1 complex	0.5
YBR245C	ISW1	ISW1a complex
YOR194C	TOA1	transcription factor TFIIA complex	7862117	Reconstituted Complex	GO:0005672	transcription factor TFIIA complex	1
YKL058W	TOA2	transcription factor TFIIA complex
YPL082C	MOT1	Mot1p complex	12805227	Reconstituted Complex	GO:0000126	transcription factor TFIIIB complex	0.25
YER148W	SPT15	Mot1p complex
YMR116C	ASC1	cytoplasmic ribosomal small subunit	10404161	Affinity Capture-MS	GO:0022627	cytosolic small ribosomal subunit	0.904761904761905
YGR214W	RPS0A	cytoplasmic ribosomal small subunit
YLR048W	RPS0B	cytoplasmic ribosomal small subunit
YOR293W	RPS10A	cytoplasmic ribosomal small subunit
YMR230W	RPS10B	cytoplasmic ribosomal small subunit
YDR025W	RPS11A	cytoplasmic ribosomal small subunit
YBR048W	RPS11B	cytoplasmic ribosomal small subunit
YOR369C	RPS12	cytoplasmic ribosomal small subunit
YDR064W	RPS13	cytoplasmic ribosomal small subunit
YCR031C	RPS14A	cytoplasmic ribosomal small subunit
YJL191W	RPS14B	cytoplasmic ribosomal small subunit
YOL040C	RPS15	cytoplasmic ribosomal small subunit
YMR143W	RPS16A	cytoplasmic ribosomal small subunit
YDL083C	RPS16B	cytoplasmic ribosomal small subunit
YML024W	RPS17A	cytoplasmic ribosomal small subunit
YDR447C	RPS17B	cytoplasmic ribosomal small subunit
YDR450W	RPS18A	cytoplasmic ribosomal small subunit
YML026C	RPS18B	cytoplasmic ribosomal small subunit
YOL121C	RPS19A	cytoplasmic ribosomal small subunit
YNL302C	RPS19B	cytoplasmic ribosomal small subunit
YLR441C	RPS1A	cytoplasmic ribosomal small subunit
YML063W	RPS1B	cytoplasmic ribosomal small subunit
YGL123W	RPS2	cytoplasmic ribosomal small subunit
YHL015W	RPS20	cytoplasmic ribosomal small subunit
YKR057W	RPS21A	cytoplasmic ribosomal small subunit
YJL136C	RPS21B	cytoplasmic ribosomal small subunit
YJL190C	RPS22A	cytoplasmic ribosomal small subunit
YLR367W	RPS22B	cytoplasmic ribosomal small subunit
YGR118W	RPS23A	cytoplasmic ribosomal small subunit
YPR132W	RPS23B	cytoplasmic ribosomal small subunit
YER074W	RPS24A	cytoplasmic ribosomal small subunit
YIL069C	RPS24B	cytoplasmic ribosomal small subunit
YGR027C	RPS25A	cytoplasmic ribosomal small subunit
YLR333C	RPS25B	cytoplasmic ribosomal small subunit
YGL189C	RPS26A	cytoplasmic ribosomal small subunit
YER131W	RPS26B	cytoplasmic ribosomal small subunit
YKL156W	RPS27A	cytoplasmic ribosomal small subunit
YHR021C	RPS27B	cytoplasmic ribosomal small subunit
YOR167C	RPS28A	cytoplasmic ribosomal small subunit
YLR264W	RPS28B	cytoplasmic ribosomal small subunit
YLR388W	RPS29A	cytoplasmic ribosomal small subunit
YDL061C	RPS29B	cytoplasmic ribosomal small subunit
YNL178W	RPS3	cytoplasmic ribosomal small subunit
YLR287C-A	RPS30A	cytoplasmic ribosomal small subunit
YOR182C	RPS30B	cytoplasmic ribosomal small subunit
YLR167W	RPS31	cytoplasmic ribosomal small subunit
YJR145C	RPS4A	cytoplasmic ribosomal small subunit
YHR203C	RPS4B	cytoplasmic ribosomal small subunit
YJR123W	RPS5	cytoplasmic ribosomal small subunit
YPL090C	RPS6A	cytoplasmic ribosomal small subunit
YBR181C	RPS6B	cytoplasmic ribosomal small subunit
YOR096W	RPS7A	cytoplasmic ribosomal small subunit
YNL096C	RPS7B	cytoplasmic ribosomal small subunit
YBL072C	RPS8A	cytoplasmic ribosomal small subunit
YER102W	RPS8B	cytoplasmic ribosomal small subunit
YPL081W	RPS9A	cytoplasmic ribosomal small subunit
YBR189W	RPS9B	cytoplasmic ribosomal small subunit
YOL067C	RTG1	Rtg1p/Rtg3p complex	9032238	Reconstituted Complex	-	-	0
YBL103C	RTG3	Rtg1p/Rtg3p complex
YPL096C-A	ERI1	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex	16278447	Affinity Capture-Western	GO:0000506	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex	1
YGR216C	GPI1	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
YNL038W	GPI15	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
YDR437W	GPI19	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
YPL076W	GPI2	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
YPL175W	SPT14	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
YBR097W	VPS15	phosphatidylinositol (PtdIns) 3-kinase complex (functions in CPY sorting)	11157979	"Affinity Capture-Western,Affinity Capture-MS"	-	-	0
YPL120W	VPS30	phosphatidylinositol (PtdIns) 3-kinase complex (functions in CPY sorting)
YLR240W	VPS34	phosphatidylinositol (PtdIns) 3-kinase complex (functions in CPY sorting)
YLR360W	VPS38	phosphatidylinositol (PtdIns) 3-kinase complex (functions in CPY sorting)
YDR123C	INO2	Ino2p/Ino4p basic helix-loop-helix heteromeric complex	7862526	"Two-hybrid,Far Western"	-	-	0
YOL108C	INO4	Ino2p/Ino4p basic helix-loop-helix heteromeric complex
YER087C-B	SBH1	Sec61p translocon complex	7961662	Co-purification	GO:0005784	translocon complex	0.6
YLR378C	SEC61	Sec61p translocon complex
YDR086C	SSS1	Sec61p translocon complex
YNR051C	BRE5	Ubp3p/Bre5p complex	12778054	"Two-hybrid,Affinity Capture-Western,Reconstituted Complex"	-	-	0
YER151C	UBP3	Ubp3p/Bre5p complex
YDL095W	PMT1	Protein O-mannosyltransferase(Pmt1p/Pmt2p)	12551906	Affinity Capture-Western	-	-	0
YAL023C	PMT2	Protein O-mannosyltransferase(Pmt1p/Pmt2p)
YKL002W	DID4	ESCRT III complex	12194857	Affinity Capture-Western	GO:0000815	ESCRT III complex	1
YLR025W	SNF7	ESCRT III complex
YMR077C	VPS20	ESCRT III complex
YKL041W	VPS24	ESCRT III complex
YBR179C	FZO1	Mgm1p/Ugo1p/Fzo1p complex	15087460	Affinity Capture-Western	-	-	0
YOR211C	MGM1	Mgm1p/Ugo1p/Fzo1p complex
YDR470C	UGO1	Mgm1p/Ugo1p/Fzo1p complex
YML067C	ERV41	Erv41p/Erv46p complex	11157978	Affinity Capture-Western	-	-	0
YAL042W	ERV46	Erv41p/Erv46p complex
YLR095C	IOC2	ISW1b complex	12482963	Affinity Capture-Western	GO:0016587	ISW1 complex	0.75
YMR044W	IOC4	ISW1b complex
YBR245C	ISW1	ISW1b complex
YLR148W	PEP3	HOPS complex	10944212	Affinity Capture-Western	GO:0030897	HOPS complex	1
YMR231W	PEP5	HOPS complex
YDL077C	VAM6	HOPS complex
YPL045W	VPS16	HOPS complex
YLR396C	VPS33	HOPS complex
YDR080W	VPS41	HOPS complex
YGR032W	GSC2	"1,3-beta-glucan synthase complex (Gsc2p/Smk1p)"	16116083	Affinity Capture-Western	GO:0000148	1,3-beta-glucan synthase complex	0.25
YPR054W	SMK1	"1,3-beta-glucan synthase complex (Gsc2p/Smk1p)"
YNL325C	FIG4	Fig4p/Vac14p complex	14528018	Affinity Capture-Western	-	-	0
YLR386W	VAC14	Fig4p/Vac14p complex
YDR363W-A	SEM1	19/22S regulator	15117943	"Affinity Capture-Western,Affinity Capture-MS"	GO:0008541	proteasome regulatory particle, lid subcomplex	0.454545454545455
YHL030W	ECM29	19/22S regulator
YFR010W	UBP6	19/22S regulator
YGR232W	NAS6	19/22S regulator
YHR027C	RPN1	19/22S regulator
YHR200W	RPN10	19/22S regulator
YFR004W	RPN11	19/22S regulator
YFR052W	RPN12	19/22S regulator
YLR421C	RPN13	19/22S regulator
YIL075C	RPN2	19/22S regulator
YER021W	RPN3	19/22S regulator
YDL147W	RPN5	19/22S regulator
YDL097C	RPN6	19/22S regulator
YPR108W	RPN7	19/22S regulator
YOR261C	RPN8	19/22S regulator
YDR427W	RPN9	19/22S regulator
YKL145W	RPT1	19/22S regulator
YDL007W	RPT2	19/22S regulator
YDR394W	RPT3	19/22S regulator
YOR259C	RPT4	19/22S regulator
YOR117W	RPT5	19/22S regulator
YGL048C	RPT6	19/22S regulator
YMR038C	CCS1	Sod1p/Ccs1p complex	11524675	Co-crystal Structure	-	-	0
YJR104C	SOD1	Sod1p/Ccs1p complex
YKL193C	SDS22	Sds22p/Glc7p complex	10775415	Affinity Capture-MS	GO:0000164	protein phosphatase type 1 complex	0.125
YER133W	GLC7	Sds22p/Glc7p complex
YLR229C	CDC42	Cdc42p/Ste20p complex	9003780	Affinity Capture-Western	-	-	0
YHL007C	STE20	Cdc42p/Ste20p complex
YPL024W	RMI1	RecQ helicase-Topo III complex	15899853	"Affinity Capture-Western,Reconstituted Complex"	GO:0031422	RecQ helicase-Topo III complex	1
YMR190C	SGS1	RecQ helicase-Topo III complex
YLR234W	TOP3	RecQ helicase-Topo III complex
YNL289W	PCL1	Pho85p/Pcl1p complex	9032248	Two-hybrid	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.142857142857143
YPL031C	PHO85	Pho85p/Pcl1p complex
YGL208W	SIP2	Snf1p/Snf4p/Sip2p complex	12393914	Affinity Capture-Western	GO:0031588	AMP-activated protein kinase complex	0.6
YDR477W	SNF1	Snf1p/Snf4p/Sip2p complex
YGL115W	SNF4	Snf1p/Snf4p/Sip2p complex
YLR319C	BUD6	polarisome complex	9632790	"Affinity Capture-Western,Two-hybrid"	GO:0000133	polarisome	0.6
YER149C	PEA2	polarisome complex
YLL021W	SPA2	polarisome complex
YPR176C	BET2	Geranylgeranyltransferase II (GGTase II)	8756702	Co-purification	GO:0005968	Rab-protein geranylgeranyltransferase complex	1
YJL031C	BET4	Geranylgeranyltransferase II (GGTase II)
YBL025W	RRN10	RNA polymerase I upstream activating factor complex	11500378	Affinity Capture-MS	GO:0000500	RNA polymerase I upstream activating factor complex	0.666666666666667
YLR141W	RRN5	RNA polymerase I upstream activating factor complex
YMR270C	RRN9	RNA polymerase I upstream activating factor complex
YOR295W	UAF30	RNA polymerase I upstream activating factor complex
YBR010W	HHT1	RNA polymerase I upstream activating factor complex
YBR009C	HHF1	RNA polymerase I upstream activating factor complex
YPL195W	APL5	AP-3 adaptor complex	9335339	Co-purification	GO:0030123	AP-3 adaptor complex	1
YGR261C	APL6	AP-3 adaptor complex
YBR288C	APM3	AP-3 adaptor complex
YJL024C	APS3	AP-3 adaptor complex
YGR082W	TOM20	mitochondrial outer membrane translocase complex	9774667	"Affinity Capture-Western,Co-purification"	GO:0005742	mitochondrial outer membrane translocase complex	0.875
YNL131W	TOM22	mitochondrial outer membrane translocase complex
YMR203W	TOM40	mitochondrial outer membrane translocase complex
YPR133W-A	TOM5	mitochondrial outer membrane translocase complex
YOR045W	TOM6	mitochondrial outer membrane translocase complex
YNL070W	TOM7	mitochondrial outer membrane translocase complex
YNL121C	TOM70	mitochondrial outer membrane translocase complex
YLR015W	BRE2	COMPASS complex	11742990	Affinity Capture-MS	GO:0048188	COMPASS complex	1
YDR469W	SDC1	COMPASS complex
YHR119W	SET1	COMPASS complex
YBR258C	SHG1	COMPASS complex
YPL138C	SPP1	COMPASS complex
YAR003W	SWD1	COMPASS complex
YKL018W	SWD2	COMPASS complex
YBR175W	SWD3	COMPASS complex
YDR292C	SRP101	signal recognition particle receptor complex	9679135	Affinity Capture-Western	GO:0005785	signal recognition particle receptor complex	1
YKL154W	SRP102	signal recognition particle receptor complex
YLR129W	DIP2	UTP B complex	14759368	Affinity Capture-MS	GO:0034388	Pwp2p-containing subcomplex of 90S preribosome	1
YCR057C	PWP2	UTP B complex
YDR449C	UTP6	UTP B complex
YLR222C	UTP13	UTP B complex
YJL069C	UTP18	UTP B complex
YLR409C	UTP21	UTP B complex
YER090W	TRP2	anthranilate synthase complex	3881257	Co-purification	GO:0005950	anthranilate synthase complex	1
YKL211C	TRP3	anthranilate synthase complex
YLR381W	CTF3	Ctf3p protein complex	11782448	Affinity Capture-Western	GO:0000778	condensed nuclear chromosome kinetochore	0.09375
YPR046W	MCM16	Ctf3p protein complex
YJR135C	MCM22	Ctf3p protein complex
YOL068C	HST1	Sum1p/Rfm1p/Hst1p complex	12612074	Affinity Capture-Western	GO:0000118	histone deacetylase complex	0.166666666666667
YOR279C	RFM1	Sum1p/Rfm1p/Hst1p complex
YDR310C	SUM1	Sum1p/Rfm1p/Hst1p complex
YLR424W	SPP382	Ntr1p/Ntr2p/Prp43p complex	16357217	"Two-hybrid,Affinity Capture-Western,Co-purification"	GO:0005681	spliceosome	0.0967741935483871
YKR022C	NTR2	Ntr1p/Ntr2p/Prp43p complex
YGL120C	PRP43	Ntr1p/Ntr2p/Prp43p complex
YHR085W	IPI1	Rix1p complex	15260980	Affinity Capture-MS	-	-	0
YNL182C	IPI3	Rix1p complex
YHR197W	RIX1	Rix1p complex
YML043C	RRN11	RNA polymerase I transcription factor complex	8702872	Affinity Capture-Western	GO:0000120	RNA polymerase I transcription factor complex	0.6
YBL014C	RRN6	RNA polymerase I transcription factor complex
YJL025W	RRN7	RNA polymerase I transcription factor complex
YNR017W	TIM23	mitochondrial inner membrane presequence translocase complex	12437925	"Two-hybrid,Affinity Capture-Western"	GO:0005744	mitochondrial inner membrane presequence translocase complex	1
YJL104W	PAM16	mitochondrial inner membrane presequence translocase complex
YLR008C	PAM18	mitochondrial inner membrane presequence translocase complex
YJL143W	TIM17	mitochondrial inner membrane presequence translocase complex
YGR033C	TIM21	mitochondrial inner membrane presequence translocase complex
YPL063W	TIM50	mitochondrial inner membrane presequence translocase complex
YER029C	SMB1	U1 snRNP complex	9630245	Affinity Capture-Western	GO:0005685	snRNP U1	0.944444444444444
YGR074W	SMD1	U1 snRNP complex
YLR275W	SMD2	U1 snRNP complex
YLR147C	SMD3	U1 snRNP complex
YOR159C	SME1	U1 snRNP complex
YFL017W-A	SMX2	U1 snRNP complex
YPR182W	SMX3	U1 snRNP complex
YDL087C	LUC7	U1 snRNP complex
YBR119W	MUD1	U1 snRNP complex
YHR086W	NAM8	U1 snRNP complex
YML046W	PRP39	U1 snRNP complex
YKL012W	PRP40	U1 snRNP complex
YDR235W	PRP42	U1 snRNP complex
YIL061C	SNP1	U1 snRNP complex
YDR240C	SNU56	U1 snRNP complex
YGR013W	SNU71	U1 snRNP complex
YLR298C	YHC1	U1 snRNP complex
YHR129C	ARP1	dynactin complex	16291862	"Affinity Capture-Western,Two-hybrid"	GO:0005869	dynactin complex	1
YDR106W	ARP10	dynactin complex
YMR294W	JNM1	dynactin complex
YPL174C	NIP100	dynactin complex
YPL209C	IPL1	Aurora B-INCENP protein kinase complex	10385519	Affinity Capture-Western	GO:0000778	condensed nuclear chromosome kinetochore	0.0303030303030303
YBR156C	SLI15	Aurora B-INCENP protein kinase complex
YMR025W	CSI1	signalosome complex	12672462	"Co-purification, Two-hybrid"	GO:0008180	signalosome	1
YJR084W	CSN12	signalosome complex
YDR179C	CSN9	signalosome complex
YIL071C	PCI8	signalosome complex
YDL216C	RRI1	signalosome complex
YOL117W	RRI2	signalosome complex
YPL096W	PNG1	Png1p/Rad23p complex	15351714	Reconstituted Complex	GO:0000111	nucleotide-excision repair factor 2 complex	0.333333333333333
YEL037C	RAD23	Png1p/Rad23p complex
YGR140W	CBF2	CBF3 complex	10352012	Co-purification	GO:0031518	CBF3 complex	1
YMR168C	CEP3	CBF3 complex
YMR094W	CTF13	CBF3 complex
YDR328C	SKP1	CBF3 complex
YHR195W	NVJ1	Swh1p/Nvj1p complex	15367582	"Affinity Capture-Western,Co-localization"	-	-	0
YAR042W	SWH1	Swh1p/Nvj1p complex
YMR186W	HSC82	HMC Complex	11689685	Affinity Capture-MS	GO:0005844	polysome	0.0588235294117647
YCL037C	SRO9	HMC Complex
YBL075C	SSA3	HMC Complex
YNL064C	YDJ1	HMC Complex
YIL079C	AIR1	TRAMP complex (Air1p)	15828860	"Affinity Capture-Western,Affinity Capture-MS"	GO:0031499	TRAMP complex	0.75
YJL050W	MTR4	TRAMP complex (Air1p)
YOL115W	PAP2	TRAMP complex (Air1p)
YML057W	CMP2	calcineurin complex	1321337	Co-purification	GO:0005955	calcineurin complex	1
YLR433C	CNA1	calcineurin complex
YKL190W	CNB1	calcineurin complex
YOR178C	GAC1	Gac1p/Glc7p complex	11459182	"Two-hybrid,Affinity Capture-Western"	GO:0000164	protein phosphatase type 1 complex	0.285714285714286
YER133W	GLC7	Gac1p/Glc7p complex
YDL127W	PCL2	Pho85p/Pcl2p complex	7973731	"Affinity Capture-Western,Reconstituted Complex"	GO:0000307	cyclin-dependent protein kinase holoenzyme complex	0.142857142857143
YPL031C	PHO85	Pho85p/Pcl2p complex
YOR260W	GCD1	eIF2B	8506384	Affinity Capture-Western	GO:0005851	eukaryotic translation initiation factor 2B complex	1
YGR083C	GCD2	eIF2B
YDR211W	GCD6	eIF2B
YLR291C	GCD7	eIF2B
YKR026C	GCN3	eIF2B
YDR141C	DOP1	Dop1p/Mon2p complex	16301316	Affinity Capture-MS	-	-	0
YNL297C	MON2	Dop1p/Mon2p complex
YDR347W	MRP1	mitochondrial ribosomal small subunit	12392552	Affinity Capture-MS	GO:0005763	mitochondrial small ribosomal subunit	0.885714285714286
YDL045W-A	MRP10	mitochondrial ribosomal small subunit
YGR084C	MRP13	mitochondrial ribosomal small subunit
YKL003C	MRP17	mitochondrial ribosomal small subunit
YPR166C	MRP2	mitochondrial ribosomal small subunit
YBL090W	MRP21	mitochondrial ribosomal small subunit
YHL004W	MRP4	mitochondrial ribosomal small subunit
YPL118W	MRP51	mitochondrial ribosomal small subunit
YPL013C	MRPS16	mitochondrial ribosomal small subunit
YMR188C	MRPS17	mitochondrial ribosomal small subunit
YNL306W	MRPS18	mitochondrial ribosomal small subunit
YDR337W	MRPS28	mitochondrial ribosomal small subunit
YGR165W	MRPS35	mitochondrial ribosomal small subunit
YBR251W	MRPS5	mitochondrial ribosomal small subunit
YMR158W	MRPS8	mitochondrial ribosomal small subunit
YBR146W	MRPS9	mitochondrial ribosomal small subunit
YNL137C	NAM9	mitochondrial ribosomal small subunit
YOR158W	PET123	mitochondrial ribosomal small subunit
YHR075C	PPE1	mitochondrial ribosomal small subunit
YDR041W	RSM10	mitochondrial ribosomal small subunit
YER050C	RSM18	mitochondrial ribosomal small subunit
YNR037C	RSM19	mitochondrial ribosomal small subunit
YKL155C	RSM22	mitochondrial ribosomal small subunit
YGL129C	RSM23	mitochondrial ribosomal small subunit
YDR175C	RSM24	mitochondrial ribosomal small subunit
YIL093C	RSM25	mitochondrial ribosomal small subunit
YJR101W	RSM26	mitochondrial ribosomal small subunit
YGR215W	RSM27	mitochondrial ribosomal small subunit
YJR113C	RSM7	mitochondrial ribosomal small subunit
Q0140	VAR1	mitochondrial ribosomal small subunit
YFR049W	YMR31	mitochondrial ribosomal small subunit
YNL081C	SWS2	mitochondrial ribosomal small subunit
YHR004C	NEM1	Nem1p/Spo7p complex	9822591	Affinity Capture-Western	-	-	0
YAL009W	SPO7	Nem1p/Spo7p complex
YDR439W	LRS4	monopolin complex	16990132	Affinity Capture-MS	GO:0033551	monopolin complex	1
YER106W	MAM1	monopolin complex
YCR086W	CSM1	monopolin complex
YPL204W	HRR25	monopolin complex
YOR039W	CKB2	CURI complex	17452446	Affinity Capture-MS	GO:0032545	CURI complex	1
YLR223C	IFH1	CURI complex
YCL031C	RRP7	CURI complex
YGR090W	UTP22	CURI complex
YLR207W	HRD3	luminal surveillance complex	16873065	Affinity Capture-MS	GO:0034099	luminal surveillance complex	1
YJL034W	KAR2	luminal surveillance complex
YDR057W	YOS9	luminal surveillance complex
YOL013C	HRD1	ubiquitin ligase ERAD-M complex	16873066	Affinity Capture-MS	GO:0000838	Hrd1p ubiquitin ligase ERAD-M complex	1
YLR207W	HRD3	ubiquitin ligase ERAD-M complex
YMR028W	TAP42	Tap42p/Pph21p/Rrd2p complex	15689491	Affinity Capture-Western	GO:0000159	protein phosphatase type 2A complex	0.285714285714286
YDL134C	PPH21	Tap42p/Pph21p/Rrd2p complex
YPL152W	RRD2	Tap42p/Pph21p/Rrd2p complex
YNL258C	DSL1	Dsl1p complex	15958492	Affinity Capture-Western	-	-	0
YGL145W	TIP20	Dsl1p complex
YDR498C	SEC20	Dsl1p complex
YLR440C	SEC39	Dsl1p complex
YGL098W	USE1	Dsl1p complex
YOR075W	UFE1	Dsl1p complex